Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_026943.1 Length=6334 Score E Sequences producing significant alignments: (Bits) Value seq3793 80.6 1e-11 >seq3793 Length=108655 Score = 80.6 bits (88), Expect = 1e-11 Identities = 240/369 (65%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 2618 GCGGGGAAGAATTTCTTTTTTGATGCAGTAAAGGACTATTATTTGAATTGTGGCCATCTA 2677 ||||| || || || ||||||||||||||| | || || |||| ||| | Sbjct 12841 GCGGGTAAAAACTTTTTTTTTGATGCAGTAGCTTCTTTTTTTTAAAATTATGGTATGTTC 12782 Query 2678 TGTAATGCAAATAAATATAATAATTTTCCATTTCAAGATGCAGAAGGCAGAAGAATTGTA 2737 ||| || |||||| ||||||||||| ||| || | | ||| | ||||||||| Sbjct 12781 GGTACCGCGAATAAAAATAATAATTTTACATGGGCTGACGGTGCAGGAAAAAGAATTGTT 12722 Query 2738 CTGTGGAATGAACCAAACTATGCTCCAGAATTTCTGGAACAGATCAAAGAAATACTAGGT 2797 | ||||||||||| || || | | | | | ||| | || |||||| || | ||| Sbjct 12721 ATTTGGAATGAACCTAATTACGAAACTCATCATATTGAAAAAATGAAAGAATTATTGGGT 12662 Query 2798 GGAGACTCCACTAGTGTAAATGTAAAGTATCAAAGTGATACTCCTGTGTATCGTACACCT 2857 || || | ||| |||| | ||||| ||| ||| |||| || | | | ||||| Sbjct 12661 GGTGATACAACTCGTGTGCACGTAAAATATAAAAATGATCAACCGCTTCAAGGCCCACCT 12602 Query 2858 GTGATTGTACTGACAAATAATAAGGTTTCATTCATGAATCATTCTGCCTTCATT---GAT 2914 | ||| || | ||||||||| | || |||||| | | || | || || || Sbjct 12601 ATCATTTTATTAACAAATAATTA---TTTATTCATAAGTAATGATAAATTGTTTGCCGAC 12545 Query 2915 AGGATTAGGGTGTTTAACTGGATGGCTGCACCATTTTTAGCACAGTATAAGAAGAAGCCA 2974 | | | || || ||| |||| || |||||| ||| ||||||||||| | Sbjct 12544 CGTCTACGTACGTATAGGTGGCAATCTGCTCCGTTTTTAAAACATTATAAGAAGAAAATA 12485 Query 2975 AATCCATTG 2983 ||||||||| Sbjct 12484 AATCCATTG 12476 Score = 78.8 bits (86), Expect = 4e-11 Identities = 174/261 (67%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 2618 GCGGGGAAGAATTTCTTTTTTGATGCAGTAAAGGACTATTATTTGAATTGTGGCCATCTA 2677 ||||| || || || ||||||||||||||| | || || |||| ||| | Sbjct 16384 GCGGGTAAAAACTTTTTTTTTGATGCAGTAGCTTCTTTTTTTTAAAATTATGGTATGTTC 16443 Query 2678 TGTAATGCAAATAAATATAATAATTTTCCATTTCAAGATGCAGAAGGCAGAAGAATTGTA 2737 ||| || |||||| ||||||||||| ||| || | | ||| | ||||||||| Sbjct 16444 GGTACCGCGAATAAAAATAATAATTTTACATGGGCTGACGGTGCAGGAAAAAGAATTGTT 16503 Query 2738 CTGTGGAATGAACCAAACTATGCTCCAGAATTTCTGGAACAGATCAAAGAAATACTAGGT 2797 | ||||||||||| || || | | | | | ||| | || |||||| || | ||| Sbjct 16504 ATTTGGAATGAACCTAATTACGAAACTCATCATATTGAAAAAATGAAAGAATTATTGGGT 16563 Query 2798 GGAGACTCCACTAGTGTAAATGTAAAGTATCAAAGTGATACTCCTGTGTATCGTACACCT 2857 || || | ||| |||| | ||||| ||| ||| |||| || | | | ||||| Sbjct 16564 GGTGATACAACTCGTGTGCACGTAAAATATAAAAATGATCAACCGCTTCAAGGCCCACCT 16623 Query 2858 GTGATTGTACTGACAAATAAT 2878 | ||| || | ||||||||| Sbjct 16624 ATCATTTTATTAACAAATAAT 16644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20152688553440