Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_023853.1 Length=2067 Score E Sequences producing significant alignments: (Bits) Value seq55141 150 2e-33 >seq55141 Length=6829 Score = 150 bits (166), Expect = 2e-33 Identities = 215/300 (72%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 552 TGCGGTGTTTGGATTTGTGGcccccccAGGATTGGTAAAGATTATGCGGTACGTAAAATT 611 || ||||||||| | ||||| ||||| | | ||| || |||||||| || | | | || Sbjct 5351 TGTGGTGTTTGGTTGTGTGGACCCCCTCGAAGTGGAAAGGATTATGCAGTTAG-ACAGTT 5293 Query 612 GG-TAATGTTTATTGTAAAGCATTAAATAAATGGTGGGATGGTTATTTAGGAGAACCTAA 670 || ||||||||| ||| || ||||| ||||||||||| ||| | ||| ||| Sbjct 5292 GGATAATGTTTACATGAAAATGTTGAATAAGTGGTGGGATGGATATAAAAATGAAGATAA 5233 Query 671 TGTTCTTATATCTGATGTAGAGCCTGACCATTTTAAATGGATAGGATATTTTCTTAAAAT 730 ||| | || |||||| | || ||||| || ||| ||||| || |||| | | ||||| Sbjct 5232 TGTGTTGATTTCTGATATTGAACCTGATCACGGTAAGTGGATTGGTTATTATTTAAAAAT 5173 Query 731 TTGGTCTGATAGATATCCTTTTATTGCTGAAATTAAAGGAAGTTCTATGAAAATTAGACC 790 |||| ||||| ||| | |||| ||| ||||| || || || | ||||||||| |||| Sbjct 5172 ATGGTGTGATATGTATGCATTTAATGCAGAAATAAAGGGTGGTACAATGAAAATTCGACC 5113 Query 791 TGAGAAAATCTTTGTTACTTCTAATTTTCGCTTATCTGATTGTTGTAATGGTGAAATCCT 850 | ||||| ||| | || ||||||||| ||| ||| | || ||||||||| || Sbjct 5112 GAAAAAAATTTTTATGACATCTAATTTTAAATTAGAAGATGTCTTTAGTGGTGAAATACT 5053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6493141727208