Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27]
23,085 sequences; 701,763,251 total letters
Query= NC_030296.1
Length=5071
Score E
Sequences producing significant alignments: (Bits) Value
seq12 154 5e-34
seq808 132 2e-27
seq1087 114 4e-22
seq516 113 1e-21
seq460 111 5e-21
>seq12
Length=1784445
Score = 154 bits (170), Expect = 5e-34
Identities = 166/220 (75%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 4290 TCCTGTGTAACCGACAAGCGAACTAAACTCCGTAGGATGCTCGAGAAACTGATGACGAGC 4349
||| | |||||| || || | ||| | ||| |||||| |||||||||||| |||||
Sbjct 1505264 TCCCGCGTAACCAACTAGTGTACTGATCTCGAAAGGATGTTCGAGAAACTGAGAGCGAGC 1505323
Query 4350 CTCTGCATCTGCTTCTTTTATATGATCCTCTGTCCAGGCATGCGCATAAGCATAATCGTG 4409
|| | | ||| ||||||||| ||| | | ||| |||||||||| |||| ||||||
Sbjct 1505324 CTTGTCGTGGGCTGCTTTTATATCATCATGAGACCACACATGCGCATACGCATGATCGTG 1505383
Query 4410 CTGTTGCGCAACTTTATCGGCGTTCGTTGTAGGTTCTCCGTTGTCGAGAGGATTGCCAGG 4469
| | | ||||| ||||| ||||| ||||| | ||| || || ||||||||||| |||||
Sbjct 1505384 TTCTCGAGCAACCTTATCAGCGTTTGTTGTTGTTTCACCATTCTCGAGAGGATTCCCAGG 1505443
Query 4470 CCCCATATAATTATGCCCGGGCCACAAAAAACCGCCACGT 4509
||||| ||||| || || | |||||| || ||| | |||
Sbjct 1505444 TCCCATGTAATTGTGGCCCGACCACAACAATCCGTCTCGT 1505483
>seq808
Length=139535
Score = 132 bits (146), Expect = 2e-27
Identities = 150/200 (75%), Gaps = 1/200 (1%)
Strand=Plus/Plus
Query 4310 AACTAAACTCCGTAGGATGCTCGAGAAACTGATGACGAGCCTCTGCATCTGCTTCTTTTA 4369
|||| | ||| |||||| |||||||||||| ||||||| |||| ||| |||||
Sbjct 70805 AACTGATCTCGAAAGGATGTTCGAGAAACTGAGAGCGAGCCTTGTCATCGGCTGCTTTT- 70863
Query 4370 TATGATCCTCTGTCCAGGCATGCGCATAAGCATAATCGTGCTGTTGCGCAACTTTATCGG 4429
||| ||| | | ||| ||||| ||||| |||| |||||| | | | ||||| ||||| |
Sbjct 70864 TATCATCGTGAGACCACGCATGAGCATACGCATGATCGTGTTCTCGAGCAACCTTATCAG 70923
Query 4430 CGTTCGTTGTAGGTTCTCCGTTGTCGAGAGGATTGCCAGGCCCCATATAATTATGCCCGG 4489
|||| ||||| | ||| | || ||||| ||||| ||||| ||||| |||| || || |
Sbjct 70924 CGTTTGTTGTTGTTTCAACATTCTCGAGTGGATTCCCAGGTCCCATGAAATTGTGGCCCG 70983
Query 4490 GCCACAAAAAACCGCCACGT 4509
||||| | || ||| | |||
Sbjct 70984 GCCACGACAATCCGTCTCGT 71003
>seq1087
Length=131032
Score = 114 bits (126), Expect = 4e-22
Identities = 135/178 (76%), Gaps = 5/178 (3%)
Strand=Plus/Plus
Query 4335 AAACTGATGACGAGCCTCTGCATCTGCTTCTTTTATATGATCCTCTGTCCAGGCATGCGC 4394
||||||| |||| | ||| ||| |||| ||||||||||||| ||||| ||||||||
Sbjct 109547 AAACTGACGACGCGGCTCAATATCAGCTTGTTTTATATGATCCGAAGTCCAAGCATGCGC 109606
Query 4395 -ATAAGCATA--ATCGTGCTGTTGCGCAACTTTATCGGCGTTCG-TTGTAGGTTCTCCGT 4450
||||||||| |||||| | ||||| ||| ||||| | ||||| || | || |
Sbjct 109607 CATAAGCATATAATCGTGTATTCGCGCAGCTTCGTCGGCTGCAGATTGTACGT-CACCAT 109665
Query 4451 TGTCGAGAGGATTGCCAGGCCCCATATAATTATGCCCGGGCCACAAAAAACCGCCACG 4508
| || ||||||||||| || | ||||||||| |||||||||||| |||| ||||
Sbjct 109666 TAATCAGGGGATTGCCAGGTCCGAGATAATTATGTCCGGGCCACAAATAACCTTCACG 109723
Score = 100 bits (110), Expect = 9e-18
Identities = 230/344 (67%), Gaps = 13/344 (4%)
Strand=Plus/Plus
Query 3321 TTCATAATGTGCACGTTGTTGTTCAAACCAATAGCGGTTAACAATATGGGACAATATTCC 3380
||| | ||||||| || || ||||| ||||| | | ||||||||||||||||||
Sbjct 108531 TTCTTTATGTGCAATTTATTATTCAATCCAATGACCGAATGCAATATGGGACAATATTCT 108590
Query 3381 GAGGTGGCCACTCCAGTTACAGTGGCCCCAATATCGAACCCTGAACGTACACCTAGCACA 3440
|| || ||||| || || ||||| || |||||||| || || || |||||||| || |
Sbjct 108591 GATGTCGCCACGCCCGTCACAGTTGCACCAATATCAAAGCCAGATCGTACACCCAGTATT 108650
Query 3441 CGAACCTGACATGTTACACGCTTAACCCAAGTGTT---CGGTGGCACAGTGGCGTATTCC 3497
| | |||||| || | | |||| ||| |||||| | | | |||||
Sbjct 108651 TTTATATCACATGTAACGTTATCTATCCAAACGTTGGACGGTGGTAAACTATTCCATTCC 108710
Query 3498 GCAGAGTCCAAATAGAACGGGAGATAGTCGACGGGAATAAAAGATAGAGGTGT-----AA 3552
| | ||||||||| || | ||| || ||||||||||| |||| ||||| ||
Sbjct 108711 GATTCGGTCAAATAGAAGGGCAAATAATCAACGGGAATAAATGATAAGGGTGTCGCCAAA 108770
Query 3553 CTGTGCCCAGGAGACTTTGCTTGGTGTCCAAATACGATGTTACTTGACTGTAACCATACG 3612
| ||| | | ||| || || |||||| | | | |||| || ||||||
Sbjct 108771 CCTTGC----GTTAATTT-TTTCGTATCCAAAAAGTGTTTGCTTTGAGCAAAAGCATACG 108825
Query 3613 AATACCAAATACGCGATTTGCTAAACGACGCCGTCCATTGTTGA 3656
||||| | ||| |||||| ||||| |||| |||| ||||
Sbjct 108826 AATACATGACACGTGATTTGGAAAACGTGGCCGACCATGTTTGA 108869
>seq516
Length=267899
Score = 113 bits (124), Expect = 1e-21
Identities = 145/195 (74%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 4304 CAAGCGAACTAAACTCCGTA-GGATGCTCGAGAAACTGATGACGAGCCTCTGCATCTGCT 4362
|||||||||| | || ||| || || || | |||||| | ||| ||| | ||||||
Sbjct 141605 CAAGCGAACTCA-CTTGGTAAGGTTGTTCCAAAAACTGTTTCTTAGCTTCTTCGTCTGCT 141547
Query 4363 TCTTTTATATGATCCTCTGTCCAGGCATGCGCATAAGCATAATCGTG-CTGTTGCGCAAC 4421
| |||||||| | || | ||| ||||||||||| |||||||| || || || |||||
Sbjct 141546 TTTTTTATATCTGCTTCAGACCACGCATGCGCATATGCATAATCATGTCTCTT-AGCAAC 141488
Query 4422 TTTATCGGCGTTCGTTGTAGGTTCTCCGTTGTCGAGAGGATTGCCAGGCCCCATATAATT 4481
| |||||| | ||||| | |||||| || || |||||||| || |||||||| ||
Sbjct 141487 ATGATCGGCATGAGTTGTTGCAGGTCCGTTTTCAAGTGGATTGCCTGGTCCCATATAGTT 141428
Query 4482 ATGCCCGGGCCACAA 4496
|| || ||||||||
Sbjct 141427 GTGTCCAGGCCACAA 141413
>seq460
Length=211561
Score = 111 bits (122), Expect = 5e-21
Identities = 152/212 (72%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 4288 AGTCCTGTGTAACCGACAAGCGAACTAAACTCCGTAGGATGCTCGAGAAACTGATGACGA 4347
||||| | |||||| || || ||||| | ||| |||||| |||||||||||| |||
Sbjct 114604 AGTCCCGCGTAACCAACTAGTGAACTGATCTCGAAAGGATGTTCGAGAAACTGAGACCGA 114545
Query 4348 GCCTCTGCATCTGCTTCTTTTATATGATCCTCTGTCCAGGCATGCGCATAAGCATAATCG 4407
| || | || ||| | ||||||| ||| | | ||| |||||| | |||| ||||
Sbjct 114544 GACTTCTCGTCGGCTGCCTTTATATCATCGTGAGACCACGCATGC---CACGCATGATCG 114488
Query 4408 TGCTGTTGCGCAACTTTATCGGCGTTCGTTGTAGGTTCTCCGTTGTCGAGAGGATTGCCA 4467
|| | | ||||| ||||| ||||| | ||| | | | || || |||||||||| |||
Sbjct 114487 TGTAATCGAGCAACCTTATCAGCGTTTGCTGTTGCTCCACCATTCCCGAGAGGATTCCCA 114428
Query 4468 GGCCCCATATAATTATGCCCGGGCCACAAAAA 4499
|| ||||| ||||| | || | ||||| ||
Sbjct 114427 GGTCCCATGTAATTGTAGCCTGCTCACAACAA 114396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16111131037900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |