Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_030296.1 Length=5071 Score E Sequences producing significant alignments: (Bits) Value seq12 154 5e-34 seq808 132 2e-27 seq1087 114 4e-22 seq516 113 1e-21 seq460 111 5e-21 >seq12 Length=1784445 Score = 154 bits (170), Expect = 5e-34 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 4290 TCCTGTGTAACCGACAAGCGAACTAAACTCCGTAGGATGCTCGAGAAACTGATGACGAGC 4349 ||| | |||||| || || | ||| | ||| |||||| |||||||||||| ||||| Sbjct 1505264 TCCCGCGTAACCAACTAGTGTACTGATCTCGAAAGGATGTTCGAGAAACTGAGAGCGAGC 1505323 Query 4350 CTCTGCATCTGCTTCTTTTATATGATCCTCTGTCCAGGCATGCGCATAAGCATAATCGTG 4409 || | | ||| ||||||||| ||| | | ||| |||||||||| |||| |||||| Sbjct 1505324 CTTGTCGTGGGCTGCTTTTATATCATCATGAGACCACACATGCGCATACGCATGATCGTG 1505383 Query 4410 CTGTTGCGCAACTTTATCGGCGTTCGTTGTAGGTTCTCCGTTGTCGAGAGGATTGCCAGG 4469 | | | ||||| ||||| ||||| ||||| | ||| || || ||||||||||| ||||| Sbjct 1505384 TTCTCGAGCAACCTTATCAGCGTTTGTTGTTGTTTCACCATTCTCGAGAGGATTCCCAGG 1505443 Query 4470 CCCCATATAATTATGCCCGGGCCACAAAAAACCGCCACGT 4509 ||||| ||||| || || | |||||| || ||| | ||| Sbjct 1505444 TCCCATGTAATTGTGGCCCGACCACAACAATCCGTCTCGT 1505483 >seq808 Length=139535 Score = 132 bits (146), Expect = 2e-27 Identities = 150/200 (75%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 4310 AACTAAACTCCGTAGGATGCTCGAGAAACTGATGACGAGCCTCTGCATCTGCTTCTTTTA 4369 |||| | ||| |||||| |||||||||||| ||||||| |||| ||| ||||| Sbjct 70805 AACTGATCTCGAAAGGATGTTCGAGAAACTGAGAGCGAGCCTTGTCATCGGCTGCTTTT- 70863 Query 4370 TATGATCCTCTGTCCAGGCATGCGCATAAGCATAATCGTGCTGTTGCGCAACTTTATCGG 4429 ||| ||| | | ||| ||||| ||||| |||| |||||| | | | ||||| ||||| | Sbjct 70864 TATCATCGTGAGACCACGCATGAGCATACGCATGATCGTGTTCTCGAGCAACCTTATCAG 70923 Query 4430 CGTTCGTTGTAGGTTCTCCGTTGTCGAGAGGATTGCCAGGCCCCATATAATTATGCCCGG 4489 |||| ||||| | ||| | || ||||| ||||| ||||| ||||| |||| || || | Sbjct 70924 CGTTTGTTGTTGTTTCAACATTCTCGAGTGGATTCCCAGGTCCCATGAAATTGTGGCCCG 70983 Query 4490 GCCACAAAAAACCGCCACGT 4509 ||||| | || ||| | ||| Sbjct 70984 GCCACGACAATCCGTCTCGT 71003 >seq1087 Length=131032 Score = 114 bits (126), Expect = 4e-22 Identities = 135/178 (76%), Gaps = 5/178 (3%) Strand=Plus/Plus Query 4335 AAACTGATGACGAGCCTCTGCATCTGCTTCTTTTATATGATCCTCTGTCCAGGCATGCGC 4394 ||||||| |||| | ||| ||| |||| ||||||||||||| ||||| |||||||| Sbjct 109547 AAACTGACGACGCGGCTCAATATCAGCTTGTTTTATATGATCCGAAGTCCAAGCATGCGC 109606 Query 4395 -ATAAGCATA--ATCGTGCTGTTGCGCAACTTTATCGGCGTTCG-TTGTAGGTTCTCCGT 4450 ||||||||| |||||| | ||||| ||| ||||| | ||||| || | || | Sbjct 109607 CATAAGCATATAATCGTGTATTCGCGCAGCTTCGTCGGCTGCAGATTGTACGT-CACCAT 109665 Query 4451 TGTCGAGAGGATTGCCAGGCCCCATATAATTATGCCCGGGCCACAAAAAACCGCCACG 4508 | || ||||||||||| || | ||||||||| |||||||||||| |||| |||| Sbjct 109666 TAATCAGGGGATTGCCAGGTCCGAGATAATTATGTCCGGGCCACAAATAACCTTCACG 109723 Score = 100 bits (110), Expect = 9e-18 Identities = 230/344 (67%), Gaps = 13/344 (4%) Strand=Plus/Plus Query 3321 TTCATAATGTGCACGTTGTTGTTCAAACCAATAGCGGTTAACAATATGGGACAATATTCC 3380 ||| | ||||||| || || ||||| ||||| | | |||||||||||||||||| Sbjct 108531 TTCTTTATGTGCAATTTATTATTCAATCCAATGACCGAATGCAATATGGGACAATATTCT 108590 Query 3381 GAGGTGGCCACTCCAGTTACAGTGGCCCCAATATCGAACCCTGAACGTACACCTAGCACA 3440 || || ||||| || || ||||| || |||||||| || || || |||||||| || | Sbjct 108591 GATGTCGCCACGCCCGTCACAGTTGCACCAATATCAAAGCCAGATCGTACACCCAGTATT 108650 Query 3441 CGAACCTGACATGTTACACGCTTAACCCAAGTGTT---CGGTGGCACAGTGGCGTATTCC 3497 | | |||||| || | | |||| ||| |||||| | | | ||||| Sbjct 108651 TTTATATCACATGTAACGTTATCTATCCAAACGTTGGACGGTGGTAAACTATTCCATTCC 108710 Query 3498 GCAGAGTCCAAATAGAACGGGAGATAGTCGACGGGAATAAAAGATAGAGGTGT-----AA 3552 | | ||||||||| || | ||| || ||||||||||| |||| ||||| || Sbjct 108711 GATTCGGTCAAATAGAAGGGCAAATAATCAACGGGAATAAATGATAAGGGTGTCGCCAAA 108770 Query 3553 CTGTGCCCAGGAGACTTTGCTTGGTGTCCAAATACGATGTTACTTGACTGTAACCATACG 3612 | ||| | | ||| || || |||||| | | | |||| || |||||| Sbjct 108771 CCTTGC----GTTAATTT-TTTCGTATCCAAAAAGTGTTTGCTTTGAGCAAAAGCATACG 108825 Query 3613 AATACCAAATACGCGATTTGCTAAACGACGCCGTCCATTGTTGA 3656 ||||| | ||| |||||| ||||| |||| |||| |||| Sbjct 108826 AATACATGACACGTGATTTGGAAAACGTGGCCGACCATGTTTGA 108869 >seq516 Length=267899 Score = 113 bits (124), Expect = 1e-21 Identities = 145/195 (74%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 4304 CAAGCGAACTAAACTCCGTA-GGATGCTCGAGAAACTGATGACGAGCCTCTGCATCTGCT 4362 |||||||||| | || ||| || || || | |||||| | ||| ||| | |||||| Sbjct 141605 CAAGCGAACTCA-CTTGGTAAGGTTGTTCCAAAAACTGTTTCTTAGCTTCTTCGTCTGCT 141547 Query 4363 TCTTTTATATGATCCTCTGTCCAGGCATGCGCATAAGCATAATCGTG-CTGTTGCGCAAC 4421 | |||||||| | || | ||| ||||||||||| |||||||| || || || ||||| Sbjct 141546 TTTTTTATATCTGCTTCAGACCACGCATGCGCATATGCATAATCATGTCTCTT-AGCAAC 141488 Query 4422 TTTATCGGCGTTCGTTGTAGGTTCTCCGTTGTCGAGAGGATTGCCAGGCCCCATATAATT 4481 | |||||| | ||||| | |||||| || || |||||||| || |||||||| || Sbjct 141487 ATGATCGGCATGAGTTGTTGCAGGTCCGTTTTCAAGTGGATTGCCTGGTCCCATATAGTT 141428 Query 4482 ATGCCCGGGCCACAA 4496 || || |||||||| Sbjct 141427 GTGTCCAGGCCACAA 141413 >seq460 Length=211561 Score = 111 bits (122), Expect = 5e-21 Identities = 152/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 4288 AGTCCTGTGTAACCGACAAGCGAACTAAACTCCGTAGGATGCTCGAGAAACTGATGACGA 4347 ||||| | |||||| || || ||||| | ||| |||||| |||||||||||| ||| Sbjct 114604 AGTCCCGCGTAACCAACTAGTGAACTGATCTCGAAAGGATGTTCGAGAAACTGAGACCGA 114545 Query 4348 GCCTCTGCATCTGCTTCTTTTATATGATCCTCTGTCCAGGCATGCGCATAAGCATAATCG 4407 | || | || ||| | ||||||| ||| | | ||| |||||| | |||| |||| Sbjct 114544 GACTTCTCGTCGGCTGCCTTTATATCATCGTGAGACCACGCATGC---CACGCATGATCG 114488 Query 4408 TGCTGTTGCGCAACTTTATCGGCGTTCGTTGTAGGTTCTCCGTTGTCGAGAGGATTGCCA 4467 || | | ||||| ||||| ||||| | ||| | | | || || |||||||||| ||| Sbjct 114487 TGTAATCGAGCAACCTTATCAGCGTTTGCTGTTGCTCCACCATTCCCGAGAGGATTCCCA 114428 Query 4468 GGCCCCATATAATTATGCCCGGGCCACAAAAA 4499 || ||||| ||||| | || | ||||| || Sbjct 114427 GGTCCCATGTAATTGTAGCCTGCTCACAACAA 114396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16111131037900