Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_004287.1 Length=5078 Score E Sequences producing significant alignments: (Bits) Value seq789 538 1e-149 seq776 383 5e-103 >seq789 Length=896 Score = 538 bits (596), Expect = 1e-149 Identities = 608/803 (76%), Gaps = 16/803 (2%) Strand=Plus/Plus Query 3372 AGCTAATGATGGTAGAGAAGACATTTTTTCTGGAGCACCACAACCAAATCAACATCATAC 3431 ||| || ||||| | ||||||| ||| |||||| |||||||||||||||||||| Sbjct 60 AGCGAACGATGGACGTCAAGACATATTTAGTGGAGCTCCACAACCAAATCAACATCACGA 119 Query 3432 ATTAGTATATGGAAAAAGCTACCATTTCACAATAACAAATGGTTTACCTGAATTTCGACA 3491 |||| | |||||||||||||| || || ||| |||| ||||| ||||| |||||| |||| Sbjct 120 ATTAATTTATGGAAAAAGCTATCACTTTACACTAACCAATGGATTACCAGAATTTAGACA 179 Query 3492 TTTAGCAACAAC-GAACTCGGGCTATTACGCTCAACAACGTTTTAAACATATACATGGAA 3550 ||| | | | | | | |||| || ||||||||||| |||||||| ||||| | Sbjct 180 TTTCGTGGCTAGTGGAAACAA-CTATATAGCACAACAACGTTTCAAACATATTCATGGGA 238 Query 3551 TTCCATGGGAAAGACTACTAATGTATGTAAGTGAAGGCGAACTCCTCCGAATGTTTAGAG 3610 | || |||||| ||||| ||||||||||||||||||| ||||| || | ||||||| Sbjct 239 TACCCTGGGAACGACTATTAATGTATGTAAGTGAAGGAGAACTTACTCGCCTATTTAGAG 298 Query 3611 ATTATACTTCATTGAAAGTGGAAGAAGTAGTATGTGAAGTCTATAGTCTCGGAGTACGAT 3670 ||||||| | | ||||| ||||| || || ||||| | || ||| | || ||||| | Sbjct 299 ATTATACAGCCCTTAAAGTTGAAGAGGTTGTTTGTGAGATTTACAGTTTAGGTGTACGTT 358 Query 3671 TACCTTTTGTAACTTCAGCCACTACAAGTTCAGTTGCTAACGCTAACGCACAATATCCAA 3730 |||||||||| ||||| || || |||||||| || |||||||| || ||||||||||||| Sbjct 359 TACCTTTTGTTACTTCTGCTACAACAAGTTCTGTAGCTAACGCAAATGCACAATATCCAA 418 Query 3731 TCGGATGTTTTCATTTTGATGAAGCTTATGAAACCAACTACGGCATAAATAATGTAGCAG 3790 | ||||||||||||||||||||||| || ||||| || || | | ||||| | Sbjct 419 TTGGATGTTTTCATTTTGATGAAGCATACGAAACTAATTATTCCCCTGACAATGTTAATG 478 Query 3791 ACATCATAAATAAAGCTCTTGGAAGTGAATGGAAAAATGCTACACGGCCTACTGCTC--- 3847 |||| || ||||| || | || ||||||||||||| | || | | | |||| Sbjct 479 ACATAATTAATAAGGCATTGGGTGCAGAATGGAAAAATG-AAAACAGAC--CAGCTCAAA 535 Query 3848 CTGTAACAACAGCTTGGTCAGAACAATTTCCGAATATATCGGCATCATCTACGAGTAGGG 3907 |||||| ||| |||||| ||| |||||| |||||| | || || | |||||| | | Sbjct 536 TTGTAACTACAAATTGGTCTGAAACATTTCCAAATATAACTGCTTCTGCAACGAGTCGAG 595 Query 3908 ATATAAACAATCCCGTAATCGTTGATTATTCTCTTCCATATTTTGAA-AATAATGTGCCT 3966 | || | ||||| |||||||| |||||| | || || | ||||||| |||||| || Sbjct 596 ACATTAGTAATCCAGTAATCGTCGATTATCCACTACC-TTTTTTGAATAATAATACACCA 654 Query 3967 AAAGACGTCGGAATATATGACTACGTTGACATTAAAAATGGAACTACTGCTTACGGTAAA 4026 ||||| || |||||||| ||||| || ||||| || ||||| |||||||| || || ||| Sbjct 655 AAAGATGTTGGAATATACGACTATGTAGACATAAAGAATGGTACTACTGCATATGGAAAA 714 Query 4027 TGCTGGGAAAAACGATTTAAACCTACGAATGGACTTTTATATGCGGAGAGTACTTTGAAA 4086 || |||||||| |||| |||||||| ||||| | ||||||| || |||||| | ||| Sbjct 715 TGTTGGGAAAAGAGATTCAAACCTACAAATGGTTTACTATATGCAGAAAGTACTCTTAAA 774 Query 4087 GGAAACGTAGTCACTCCGCTTGCAGC-GCAACCA--ACTAATATAATGACACCAATACCT 4143 ||||| || | ||| | || ||| || || | | |||||| ||||| |||||||| Sbjct 775 GGAAATGTTGCTACTTC---TGAAGCAGCTACAAATAGTAATATTATGACTCCAATACCC 831 Query 4144 GGATTAGAAAATGGGTATTTCAT 4166 |||||||||||||| || || || Sbjct 832 GGATTAGAAAATGGCTACTTTAT 854 >seq776 Length=653 Score = 383 bits (424), Expect = 5e-103 Identities = 451/607 (74%), Gaps = 6/607 (1%) Strand=Plus/Minus Query 474 GATAATGTTAATACTCCTCGTGAACTTTTGTCTGCTATGGAGTCTTTTGAAGAGTCTTCA 533 ||| ||| ||| ||| ||| | || | ||||| ||||||||||||||||||||||||| Sbjct 604 GATCATGCTAACACTGCTCATCAATTACTGTCTAGTATGGAGTCTTTTGAAGAGTCTTCA 545 Query 534 AATGAAATTCCAAGTCAAGCAGCGACCGGAGTATTTGCAGAAACTGGAAACCGTTATGAT 593 || ||| |||||||| || ||| | | ||| || ||| ||||| | ||| || | | Sbjct 544 AACGAAGTTCCAAGTGAAACAGAGGCAGGAATACTTGAAGAAATTAGAAGTGGTAGTCAA 485 Query 594 GTCCACGATCCAAGATTGGGATACTATGATGAAAGTTGTGAGCGCA---GAAGAAGAAAT 650 | || ||| ||||| | | | || || || || ||| | ||| | Sbjct 484 AGCAGTAATAGCAGAATGGGAAG--AAGCACAGAGC-GTATGCTCAAGCGAAAACGAACT 428 Query 651 GATAGAATTCTTAACCGAGGAATTCTCAGCATTTATTCAAAAAGATTGCAAAAACAACTC 710 || |||||||||| ||||||||||| |||||| |||||| || ||||||| |||| Sbjct 427 AATTCAATTCTTAACAGAGGAATTCTCTCTATTTATGGAAAAAGTTTACAAAAACGACTC 368 Query 711 GTTGGAAGAATTGTACGAAACAGTGGACGAGCCGAAATTGGTACATTCAAGCCTAGCTAC 770 |||||| |||| ||| || |||| || || ||| | |||| |||| |||| || Sbjct 367 CTTGGAAACCTTGTGCGACACTCTGGAAGAACCCAAACTAATACAATCAAACCTACAAAC 308 Query 771 GATGAAGTATTACTTAACGCTCATCTTACAGAACAAAGCAAAAGAAACTACGGATTTGAA 830 |||||||| |||||||| | ||||||||||||||||||| ||||||||||| ||||| Sbjct 307 GATGAAGTTGTACTTAACTCGTATCTTACAGAACAAAGCAATGGAAACTACGGACTTGAA 248 Query 831 AGGCCATTCCCTGTCAGTTATCAACAAATGGAACTCTGTCATAAAGACGCCTTTGAAACT 890 |||||||||||| | ||||||||||||||||||||||||| ||||| ||| ||||||| Sbjct 247 AGGCCATTCCCTATTGCTTATCAACAAATGGAACTCTGTCATCAAGACTCCTATGAAACT 188 Query 891 CCTATCGAACGAGAAAGAAGCCTCGACCAATTCTTTCGAGCGGTGGAACGCAGAGTGGGA 950 ||| ||||||| | ||||| || |||||||||| |||||||||||| ||| ||||| Sbjct 187 CCTGACGAACGATACAGAAGTCTTAGCCAATTCTTTGCAGCGGTGGAACGAAGAATGGGA 128 Query 951 ATCCTCGCAGATCAGTTATGCAGAGCTTTTGAGAATAATACAGTTAATGCAAGAAGAATT 1010 ||||| | |||||||||| | ||| | | | ||| | |||||| |||||||| Sbjct 127 ATCCTTTCCACTCAGTTATGCGAATCTTATAAAATTAACAGCACAAATGCACGAAGAATT 68 Query 1011 TTACACGACTCCATTGAGTTTAGACCAGGCCACAGATTTCGTGAAATGGTTTACAAAATC 1070 |||||||| ||||| ||| | ||| | | |||||||||| |||||| || || Sbjct 67 TTACACGATTCCATCGAGCTCAGAGGAAATAAAGCATTTCGTGAAGTGGTTTTTAACCTC 8 Query 1071 AGGAGAG 1077 |||| || Sbjct 7 AGGAAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16136916219630