Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_004288.1 Length=5002 Score E Sequences producing significant alignments: (Bits) Value seq789 618 1e-173 seq776 499 1e-137 >seq789 Length=896 Score = 618 bits (684), Expect = 1e-173 Identities = 675/896 (75%), Gaps = 24/896 (3%) Strand=Plus/Plus Query 3265 GCACAAGTCGATCCACGAAGTGGAGGACAAGCTGCTGGAGGTATGGGAGCAGGAGGTGCT 3324 |||||||| |||||||||| || ||||||||||| || |||||||| ||||| || || Sbjct 1 GCACAAGTTGATCCACGAACAGGTGGACAAGCTGCAGGTGGTATGGGTGCAGGTGGAGCA 60 Query 3325 GCAAACGATGGACGACAAGACATTTATGCAGGAGCGCCACAACCTAACCAACACCACGAA 3384 || ||||||||||| |||||||| | | ||||| |||||||| || ||||| |||||| Sbjct 61 GCGAACGATGGACGTCAAGACATATTTAGTGGAGCTCCACAACCAAATCAACATCACGAA 120 Query 3385 TTTGTTTATGGAAAAAGTTATCATTTTACTTTAACAAATGGCTTACCTGATTTTCGTCAT 3444 || ||||||||||||| ||||| ||||| |||| ||||| ||||| || ||| | ||| Sbjct 121 TTAATTTATGGAAAAAGCTATCACTTTACACTAACCAATGGATTACCAGAATTTAGACAT 180 Query 3445 TTCATAAACACAATAAGCAACAACTATTCTGCTCAATTACGATTTAAACATATTCATGGT 3504 ||| | | | | ||||||||| || ||| ||| || |||||||||||||| Sbjct 181 TTCGT---GGCTAGTGGAAACAACTATATAGCACAACAACGTTTCAAACATATTCATGGG 237 Query 3505 ATACCTTGGGAACGTTTATTAATGTATCTGAGTGAAGGAGAATATCTACGTTTGATGCGC 3564 ||||| |||||||| ||||||||||| | |||||||||||| | || | | | Sbjct 238 ATACCCTGGGAACGACTATTAATGTATGTAAGTGAAGGAGAACTTACTCGCCTATTTAGA 297 Query 3565 GACTATACAGCGGTTAAAGTTGAAGAAGTTGTTTGCGAAGTTTATAGTCTAGGAGTACGT 3624 || |||||||| ||||||||||||| |||||||| || |||| ||| |||| |||||| Sbjct 298 GATTATACAGCCCTTAAAGTTGAAGAGGTTGTTTGTGAGATTTACAGTTTAGGTGTACGT 357 Query 3625 TTACCATTCGTGACTTCAGCTACAACAAGTTCTGTGGCCAATGCTAATGCACAATATCCT 3684 ||||| || || ||||| ||||||||||||||||| || || || |||||||||||||| Sbjct 358 TTACCTTTTGTTACTTCTGCTACAACAAGTTCTGTAGCTAACGCAAATGCACAATATCCA 417 Query 3685 ATAGGATGTTTTCATTTTGATAAAGCTTATGAAACACAATATGATGTCAACAATANNNNN 3744 || |||||||||||||||||| |||| || ||||| | ||| ||||| Sbjct 418 ATTGGATGTTTTCATTTTGATGAAGCATACGAAACTAATTATTCCCCTGACAAT------ 471 Query 3745 NNNNNNNNNNNNNNNNTAAATAAAGCTTTAGGGTCAGAATGGAAAAACACAACAAGACCA 3804 | ||||| || || || ||||||||||||| || |||||| Sbjct 472 ---GTTAATGACATAATTAATAAGGCATTGGGTGCAGAATGGAAAAATGAAAACAGACCA 528 Query 3805 GCTCAACCAGTAACAACTTCGTGGTCAGAAACTTTTCCAAATATAACTGCATCAGCAACT 3864 |||||| ||||| || ||||| ||||| ||||||||||||||||| || ||||| Sbjct 529 GCTCAAATTGTAACTACAAATTGGTCTGAAACATTTCCAAATATAACTGCTTCTGCAACG 588 Query 3865 AGTCGTGATATTAATAATCCTGTAATTGTTCAGTACCCTTTACC-ATATGGAATAAATAA 3923 ||||| || |||| |||||| ||||| || | || || |||| | | |||| ||||| Sbjct 589 AGTCGAGACATTAGTAATCCAGTAATCGTCGATTATCCACTACCTTTTTTGAAT-AATAA 647 Query 3924 TGCTCCCAAAGATGTTGGTATATATGATTATGTAGACATCAAGAATGGTACAACTGCTTA 3983 | | || ||||||||||| ||||| || ||||||||||| ||||||||||| ||||| || Sbjct 648 TACACCAAAAGATGTTGGAATATACGACTATGTAGACATAAAGAATGGTACTACTGCATA 707 Query 3984 TGGAAAATGTTGGGAAAAAAGATTCAAACCTAAAAATGGAATATTATACGCAGAAAGTAG 4043 |||||||||||||||||| ||||||||||||| |||||| || |||| |||||||||| Sbjct 708 TGGAAAATGTTGGGAAAAGAGATTCAAACCTACAAATGGTTTACTATATGCAGAAAGTAC 767 Query 4044 TTT---ATTAACTAATGGTAATACTACAGCAGTTGAAGGTCCTACCAATTTTATGACTCC 4100 | | | || | || || | || ||||| | | || ||| |||||||||| Sbjct 768 TCTTAAAGGAAATGTTGCTACTTCTGAAGCAGCTACA---AATAGTAATATTATGACTCC 824 Query 4101 TATACCAGGTCTTGAAAATGGTTATTTTATTGGAACTAATCAAATA--AGTGAACG 4154 ||||| || | |||||||| || |||||| || | |||||| |||||||| Sbjct 825 AATACCCGGATTAGAAAATGGCTACTTTATT--AATTCTGCAAATATTAGTGAACG 878 >seq776 Length=653 Score = 499 bits (552), Expect = 1e-137 Identities = 475/605 (79%), Gaps = 2/605 (0%) Strand=Plus/Minus Query 477 GATAATGCTAATACTACTGGTGAACTCTTGTCTGCTATGGAGTCTTTTGAAGAGTCTTCA 536 ||| ||||||| ||| || | || | ||||| ||||||||||||||||||||||||| Sbjct 604 GATCATGCTAACACTGCTCATCAATTACTGTCTAGTATGGAGTCTTTTGAAGAGTCTTCA 545 Query 537 GATGAAATACCAAGTGAAGCAGCGACAGGAGCACTTGAAGAGATTAGAAATCGTGCTCAA 596 | ||| | ||||||||| ||| | ||||| ||||||||| ||||||| | || |||| Sbjct 544 AACGAAGTTCCAAGTGAAACAGAGGCAGGAATACTTGAAGAAATTAGAAGTGGTAGTCAA 485 Query 597 GTCGGTAATACAAGATTGGGAAGACATGCTGAAAGAACATTCAACCGAAGAAGAAATGAT 656 | |||||| ||| |||||||| | || | | |||| |||| | ||| | || Sbjct 484 AGCAGTAATAGCAGAATGGGAAGAAGCACAGAGCGTATGCTCAAGCGAAAACGAACTAAT 425 Query 657 AGAATACTTGACAGAGGAATTCTTAGCTTTTATTCAAAAAGATTGCAAAAACGACTCATT 716 ||| ||| ||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 424 TCAATTCTTAACAGAGGAATTCTCTCTATTTATGGAAAAAGTTTACAAAAACGACTCCTT 365 Query 717 GGAAACCTTGTACGAAACAGTGGAAGAACCCAAACTAATACAATCAAGCCTAGCTACGAT 776 ||||||||||| ||| || ||||||||||||||||||||||||||| |||| ||||| Sbjct 364 GGAAACCTTGTGCGACACTCTGGAAGAACCCAAACTAATACAATCAAACCTACAAACGAT 305 Query 777 GAAGTATTACTTAACGCTCACCTTGCAAAACAAAGCGAAAGAGACTACGGGCTTGAAAGG 836 ||||| |||||||| | | ||| || |||||||| | || ||||||| ||||||||| Sbjct 304 GAAGTTGTACTTAACTCGTATCTTACAGAACAAAGCAATGGAAACTACGGACTTGAAAGG 245 Query 837 CCATTCCCTGTCAGTTATCAACAAATGGAACTCTGTCATAAAGACGCCTTTGAAACTCCT 896 ||||||||| | ||||||||||||||||||||||||| ||||| ||| |||||||||| Sbjct 244 CCATTCCCTATTGCTTATCAACAAATGGAACTCTGTCATCAAGACTCCTATGAAACTCCT 185 Query 897 ATCGAACGAGAAAGAAG-CTTCGACCAATTCTTTCGAGCGGTGGAACGAAGAATGGGAAT 955 ||||||| | ||||| ||| | |||||||||| |||||||||||||||||||||||| Sbjct 184 GACGAACGATACAGAAGTCTTAG-CCAATTCTTTGCAGCGGTGGAACGAAGAATGGGAAT 126 Query 956 CCTCGCAGATCAGTTATGCAGAGCTTTTGAGAATAATACAAGTAATGCAAGAAGAATTCT 1015 ||| | |||||||||| | ||| | | | ||| | | |||||| |||||||| | Sbjct 125 CCTTTCCACTCAGTTATGCGAATCTTATAAAATTAACAGCACAAATGCACGAAGAATTTT 66 Query 1016 ACACGACTCCATTGAGCTTAGAAGAAACCAAAACTTTCGTAAAATGGTTTTTGACATCAG 1075 |||||| ||||| ||||| ||| |||| || |||||| || |||||||| || |||| Sbjct 65 ACACGATTCCATCGAGCTCAGAGGAAATAAAGCATTTCGTGAAGTGGTTTTTAACCTCAG 6 Query 1076 GAAAG 1080 ||||| Sbjct 5 GAAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15893726524470