Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_006555.1 Length=5039 Score E Sequences producing significant alignments: (Bits) Value seq789 589 7e-165 >seq789 Length=896 Score = 589 bits (652), Expect = 7e-165 Identities = 599/775 (77%), Gaps = 13/775 (2%) Strand=Plus/Plus Query 3336 GCTCAAGTTGATCCACGTAGTGGAGGACAAGCAGCTGGAGGTATGGGAGGAGGTGGAGCA 3395 || |||||||||||||| | || |||||||| || || |||||||| | |||||||||| Sbjct 1 GCACAAGTTGATCCACGAACAGGTGGACAAGCTGCAGGTGGTATGGGTGCAGGTGGAGCA 60 Query 3396 GCCAATGATGGGAGACAAGACATATTTGCAGGAGCACCTCAACCAAATCAAAATCACGAG 3455 || || ||||| | |||||||||||| ||||| || |||||||||||| ||||||| Sbjct 61 GCGAACGATGGACGTCAAGACATATTTAGTGGAGCTCCACAACCAAATCAACATCACGAA 120 Query 3456 CTCATTTATGGCAAAAGTTATCATTTTACACTTACTAATGGTTTACCCGATTTTAGACAT 3515 | |||||||| ||||| ||||| |||||||| || ||||| ||||| || ||||||||| Sbjct 121 TTAATTTATGGAAAAAGCTATCACTTTACACTAACCAATGGATTACCAGAATTTAGACAT 180 Query 3516 GCCATTACTA------ACAATGCCTACAGTGCACAATTACGATTCAAACATATTCATGGT 3569 | | ||| |||| ||| | |||||| ||| ||||||||||||||||| Sbjct 181 TTCGTGGCTAGTGGAAACAA---CTATATAGCACAACAACGTTTCAAACATATTCATGGG 237 Query 3570 ATACCATGGGAAAGATTATTAATGTATGTAAGTGAAGGTGAA-TTATTACGATTAATGCG 3628 ||||| |||||| || |||||||||||||||||||||| ||| ||| | || || | | Sbjct 238 ATACCCTGGGAACGACTATTAATGTATGTAAGTGAAGGAGAACTTACT-CGCCTATTTAG 296 Query 3629 AGACTACACAGCCTTAAAAGTTGAAGAAGTTGTATGTGAAGTATACAGCTTGGGAGTACG 3688 ||| || |||||| | ||||||||||| ||||| ||||| | ||||| || || ||||| Sbjct 297 AGATTATACAGCCCTTAAAGTTGAAGAGGTTGTTTGTGAGATTTACAGTTTAGGTGTACG 356 Query 3689 TTTACCATTTGTGACATCAGCTACTACCAGTTCTGTAGCAAATGCTAATGCTCAATATCC 3748 |||||| ||||| || || ||||| || ||||||||||| || || ||||| |||||||| Sbjct 357 TTTACCTTTTGTTACTTCTGCTACAACAAGTTCTGTAGCTAACGCAAATGCACAATATCC 416 Query 3749 AATAGGTTGTTTTCATTTTGATAATGCATATGAAATACAGTATGACGCCACTCAA-GTCA 3807 ||| || ||||||||||||||| | ||||| |||| | ||| | || ||| || | Sbjct 417 AATTGGATGTTTTCATTTTGATGAAGCATACGAAACTAATTAT-TCCCCTGACAATGTTA 475 Query 3808 ATGATGTAATTAATAAAGCATTAGGTGCTGAATGGAAGAATTCCACTCGCCCAGATACAC 3867 |||| |||||||||| ||||| ||||| |||||||| ||| | | |||| | | Sbjct 476 ATGACATAATTAATAAGGCATTGGGTGCAGAATGGAAAAATGAAAACAGACCAGCTCAAA 535 Query 3868 CTGTATCCACTCAATGGTCTGAAACATTTCCTAATATAAGCGCTTCAAGTACTAGTCGTG 3927 |||| | || | ||||||||||||||||| ||||||| ||||| || ||||| | Sbjct 536 TTGTAACTACAAATTGGTCTGAAACATTTCCAAATATAACTGCTTCTGCAACGAGTCGAG 595 Query 3928 ATATTTCTAATCCTGTAATTGTTAATTATCCCCTTCCATTTGGTGTTACAAATGTTCCTA 3987 | ||| |||||| ||||| || ||||||| || || ||| || ||| || | Sbjct 596 ACATTAGTAATCCAGTAATCGTCGATTATCCACTACCTTTTTTGAATAATAATACACCAA 655 Query 3988 AAGATGTAGGAATATATGACTATGTTgaaataaaaaatggaactacagcttatggaaaat 4047 ||||||| |||||||| |||||||| || ||||| ||||| ||||| || |||||||||| Sbjct 656 AAGATGTTGGAATATACGACTATGTAGACATAAAGAATGGTACTACTGCATATGGAAAAT 715 Query 4048 gctgggaaaaaagatttaaaccaaaaaatggCATATTATACGCTGAAAGTACACT 4102 | |||||||| ||||| ||||| | |||||| || |||| || |||||||| || Sbjct 716 GTTGGGAAAAGAGATTCAAACCTACAAATGGTTTACTATATGCAGAAAGTACTCT 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16012121507640