Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_018399.1 Length=5012 Score E Sequences producing significant alignments: (Bits) Value seq789 598 1e-167 seq776 479 9e-132 >seq789 Length=896 Score = 598 bits (662), Expect = 1e-167 Identities = 653/862 (76%), Gaps = 13/862 (2%) Strand=Plus/Plus Query 3291 CACAAGTTGATCCACGAAGTGGAGGTCAAGCTGCCGGAGGTATGGGAGCTGGTGGTGCTG 3350 |||||||||||||||||| || || |||||||| || |||||||| || ||||| || | Sbjct 2 CACAAGTTGATCCACGAACAGGTGGACAAGCTGCAGGTGGTATGGGTGCAGGTGGAGCAG 61 Query 3351 CTAATGATGGACGACAAGACATATTTGCTGGAGCTCCACAACCAAATCAACACCATAAAC 3410 | || |||||||| |||||||||||| |||||||||||||||||||||||| || || Sbjct 62 CGAACGATGGACGTCAAGACATATTTAGTGGAGCTCCACAACCAAATCAACATCACGAAT 121 Query 3411 TTGTATATGGCAAGAGTTACCATTTTACTGTTAGTAATGGCTTACCTGATTTTCGTCATT 3470 | | ||||| || || || || ||||| | | ||||| ||||| || ||| | |||| Sbjct 122 TAATTTATGGAAAAAGCTATCACTTTACACTAACCAATGGATTACCAGAATTTAGACATT 181 Query 3471 TCTTAAATACAATTAGTAATAATTACTCTGCTCAGTTACGTTTTAAACATATTCATGGTA 3530 || | || | | || || || || || |||||| |||||||||||||| | Sbjct 182 TCGTGGCTAG---TGGAAACAACTATATAGCACAACAACGTTTCAAACATATTCATGGGA 238 Query 3531 TTCCATGGGAGCGTTTATTAATGTATCTGAGCGAAGGAGAA-TTATTGCGGTTAAGACGC 3589 | || ||||| || ||||||||||| | || ||||||||| ||| | || || | Sbjct 239 TACCCTGGGAACGACTATTAATGTATGTAAGTGAAGGAGAACTTACT-CGCCTATTTAGA 297 Query 3590 GATTATACAGCTGTAAAAGCTGAAGAAGTTGTTTGTGAAGTTTATAGTTTGGGAGTACGT 3649 ||||||||||| | |||| |||||| ||||||||||| |||| ||||| || |||||| Sbjct 298 GATTATACAGCCCTTAAAGTTGAAGAGGTTGTTTGTGAGATTTACAGTTTAGGTGTACGT 357 Query 3650 TTACCATTTGTTACTTCAGCAACTACAAGTTCAGTAGCAAATGCGAATGCTCAATATCCA 3709 ||||| ||||||||||| || || |||||||| ||||| || || ||||| ||||||||| Sbjct 358 TTACCTTTTGTTACTTCTGCTACAACAAGTTCTGTAGCTAACGCAAATGCACAATATCCA 417 Query 3710 ATAGGATGTTTTCATTTTGATCAAGCATATGAAACTATATATGATTCTAATAATGTTGCT 3769 || |||||||||||||||||| ||||||| ||||||| ||| || | |||||| | Sbjct 418 ATTGGATGTTTTCATTTTGATGAAGCATACGAAACTAATTATTCCCCTGACAATGTTAAT 477 Query 3770 GATGTAATTAATAAAGCACTAGGAGCAGAATGGAAAAACACAACTAGACCCGCACAACCT 3829 || |||||||||| ||| | || |||||||||||||| || ||||| || ||| | Sbjct 478 GACATAATTAATAAGGCATTGGGTGCAGAATGGAAAAATGAAAACAGACCAGCTCAAATT 537 Query 3830 GTAACTACAGCATGGTCAGAAACTTTCCCAAATATCAGTTCTTCCACTACAAGCCGAGAT 3889 ||||||||| ||||| ||||| || |||||||| | | |||| | || || ||||| Sbjct 538 GTAACTACAAATTGGTCTGAAACATTTCCAAATATAACTGCTTCTGCAACGAGTCGAGAC 597 Query 3890 ATAAATAACCCGGTAATTGTACAGTACCCATTACCATACGGCATTAATAATGCTCCAAAA 3949 || | ||| || ||||| || | || ||| |||| | | ||||||| | |||||| Sbjct 598 ATTAGTAATCCAGTAATCGTCGATTATCCACTACCTTTTTTGAATAATAATACACCAAAA 657 Query 3950 GATGTTGGTATATATGATTACGTTGATATAAAAAATGGAACAACTGCCCATGGAAAATGT 4009 |||||||| ||||| || || || || ||||| ||||| || ||||| ||||||||||| Sbjct 658 GATGTTGGAATATACGACTATGTAGACATAAAGAATGGTACTACTGCATATGGAAAATGT 717 Query 4010 TGGGAAAAAAGATTTAAACCTGCCAATGGTATTCTGTATGCTGAAAGCAGTTT---ATTA 4066 |||||||| ||||| |||||| | |||||| | || ||||| ||||| | | | | | Sbjct 718 TGGGAAAAGAGATTCAAACCTACAAATGGTTTACTATATGCAGAAAGTACTCTTAAAGGA 777 Query 4067 ACTAGTAGTAATAATACAGGAG-TAGAAGGCCCTACAAATTTTATGACTCCAATTCCAGG 4125 | | | || | | || || || || || ||| ||||||||||||| || || Sbjct 778 AATGTTGCTACTTCTGAAGCAGCTACAA----ATAGTAATATTATGACTCCAATACCCGG 833 Query 4126 TTTAGAAAATGGCTACTTTATT 4147 ||||||||||||||||||||| Sbjct 834 ATTAGAAAATGGCTACTTTATT 855 >seq776 Length=653 Score = 479 bits (530), Expect = 9e-132 Identities = 470/604 (78%), Gaps = 2/604 (0%) Strand=Plus/Minus Query 478 ATAATGCTAATACTACTGGTGAACTCTTGTCTGCTATGGAGTCTTTTGAAGAGCCTACAG 537 || ||||||| ||| || | || | ||||| ||||||||||||||||||| || || Sbjct 603 ATCATGCTAACACTGCTCATCAATTACTGTCTAGTATGGAGTCTTTTGAAGAGTCTTCAA 544 Query 538 ATGAAATACCAAGTGAAACAGCGACAGGAGCACTTGAAGAAATTAGAAGTCGTGATGAAC 597 | ||| | ||||||||||||| | ||||| ||||||||||||||||||| || | || Sbjct 543 ACGAAGTTCCAAGTGAAACAGAGGCAGGAATACTTGAAGAAATTAGAAGTGGTAGTCAAA 484 Query 598 TCAGTGATACAAGATTGGGAAGATATGCTGAAAGAACACTCAACCGAAGAAGAAATGAGA 657 |||| ||| ||| |||||||| | || | | ||||| |||| | ||| | | Sbjct 483 GCAGTAATAGCAGAATGGGAAGAAGCACAGAGCGTATGCTCAAGCGAAAACGAACTAATT 424 Query 658 GAATACTTAACAGAGGAATTCTCAGCTTTTATTCAAAAAGATTGCAAAAACGACTCATTG 717 ||| |||||||||||||||||| ||||| |||||| || |||||||||||| ||| Sbjct 423 CAATTCTTAACAGAGGAATTCTCTCTATTTATGGAAAAAGTTTACAAAAACGACTCCTTG 364 Query 718 GAAACCTTGTACGAAACAGTGGAAGAGCCCAAACTAGTACAATCCAGCCTAGCCACAATG 777 |||||||||| ||| || ||||||| ||||||||| ||||||| | |||| || ||| Sbjct 363 GAAACCTTGTGCGACACTCTGGAAGAACCCAAACTAATACAATCAAACCTACAAACGATG 304 Query 778 AAATACTACTTAACGCTTACCTTACAAAACAAAGCGAAGGAAACTACGGGATTGAAAGGC 837 || | |||||||| | || |||||| |||||||| | ||||||||||| ||||||||| Sbjct 303 AAGTTGTACTTAACTCGTATCTTACAGAACAAAGCAATGGAAACTACGGACTTGAAAGGC 244 Query 838 CATTCCCTATCAGTTATCAGCAAATGGAACTCTGTCATAAGGACGCCTTTGAAACTCCTA 897 |||||||||| |||||| |||||||||||||||||| | ||| ||| |||||||||| Sbjct 243 CATTCCCTATTGCTTATCAACAAATGGAACTCTGTCATCAAGACTCCTATGAAACTCCTG 184 Query 898 TCGAACGAGAAAGAAG-CTTCGACCAATTCTTTCGAGCGGTGGAACGAAGAATGGGAATC 956 ||||||| | ||||| ||| | |||||||||| ||||||||||||||||||||||||| Sbjct 183 ACGAACGATACAGAAGTCTTAG-CCAATTCTTTGCAGCGGTGGAACGAAGAATGGGAATC 125 Query 957 CTCGCAGATCAATTATGTCGAGCTTTTGAGAATAATACAGTTAATGCACGAAGAATTTTA 1016 || | ||| ||||| | ||| | | | ||| | |||||||||||||||||| Sbjct 124 CTTTCCACTCAGTTATGCGAATCTTATAAAATTAACAGCACAAATGCACGAAGAATTTTA 65 Query 1017 CACGACTCCATTGAGCTTCGAAGAAACCAAAATTTTCGTGAAATGGTTTTTGGGATCAGG 1076 ||||| ||||| ||||| || |||| || ||||||||| |||||||| ||||| Sbjct 64 CACGATTCCATCGAGCTCAGAGGAAATAAAGCATTTCGTGAAGTGGTTTTTAACCTCAGG 5 Query 1077 AAAG 1080 |||| Sbjct 4 AAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15925725168570