Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_018450.1 Length=5053 Score E Sequences producing significant alignments: (Bits) Value seq789 1070 0.0 seq776 996 0.0 >seq789 Length=896 Score = 1070 bits (1186), Expect = 0.0 Identities = 775/896 (86%), Gaps = 0/896 (0%) Strand=Plus/Plus Query 3277 GCACAAGTTGATCCACGTACAGGAGGACAAGCAGCCGGTGGAATGGGTGCAGGTGGAGCA 3336 ||||||||||||||||| ||||| |||||||| || ||||| |||||||||||||||||| Sbjct 1 GCACAAGTTGATCCACGAACAGGTGGACAAGCTGCAGGTGGTATGGGTGCAGGTGGAGCA 60 Query 3337 GCAAACGATGGACGTCAGGACATATTTAGTGGAGCTCCTCAGCCTAATCAACATCATCAA 3396 || |||||||||||||| |||||||||||||||||||| || || ||||||||||| || Sbjct 61 GCGAACGATGGACGTCAAGACATATTTAGTGGAGCTCCACAACCAAATCAACATCACGAA 120 Query 3397 TTAATATATGGGAAAAGCTATCACTTTACATTAACCAATGGATTACCAGATTATAGACAC 3456 ||||| ||||| |||||||||||||||||| ||||||||||||||||||| | |||||| Sbjct 121 TTAATTTATGGAAAAAGCTATCACTTTACACTAACCAATGGATTACCAGAATTTAGACAT 180 Query 3457 TTTGTGGCAAGTGGAAACAATTACATTGCCCAACAAAGATTTAAACATATACACGGAATA 3516 || ||||| ||||||||||| || || || |||||| | || |||||||| || || ||| Sbjct 181 TTCGTGGCTAGTGGAAACAACTATATAGCACAACAACGTTTCAAACATATTCATGGGATA 240 Query 3517 CCTTGGGAACGCTTATTAATGTATGTAAGCGAAGGAGAACTAGCTAGGTTATTCAGAGAT 3576 || |||||||| |||||||||||||||| ||||||||||| || | |||| |||||| Sbjct 241 CCCTGGGAACGACTATTAATGTATGTAAGTGAAGGAGAACTTACTCGCCTATTTAGAGAT 300 Query 3577 TACACAGCTCTCAAGGTTGAAGAAGTTGTATGCGAGATTTATAGTTTAGGAGTTCGTTTA 3636 || ||||| || || |||||||| ||||| || |||||||| |||||||| || |||||| Sbjct 301 TATACAGCCCTTAAAGTTGAAGAGGTTGTTTGTGAGATTTACAGTTTAGGTGTACGTTTA 360 Query 3637 CCATTTGTTACTTCTGCCACAACAAGTTCTGTAGCAAATGCAAACGCACAATATCCCATT 3696 || |||||||||||||| ||||||||||||||||| || ||||| ||||||||||| ||| Sbjct 361 CCTTTTGTTACTTCTGCTACAACAAGTTCTGTAGCTAACGCAAATGCACAATATCCAATT 420 Query 3697 GGATGCTTTCACTTTGATGAAGCATATGAGACTAATTATTCTCCAACTAATGTTAGTGAT 3756 ||||| ||||| |||||||||||||| || ||||||||||| || ||||||| ||| Sbjct 421 GGATGTTTTCATTTTGATGAAGCATACGAAACTAATTATTCCCCTGACAATGTTAATGAC 480 Query 3757 ATAATTAATAAGGCATTAGGAGCAGAATGGAAAAACGAAAATAGACCTGCACAAATTGTA 3816 ||||||||||||||||| || |||||||||||||| ||||| ||||| || ||||||||| Sbjct 481 ATAATTAATAAGGCATTGGGTGCAGAATGGAAAAATGAAAACAGACCAGCTCAAATTGTA 540 Query 3817 ACTACAAACTGGTCAGAAACGTTTCCAAATATAACAGCATCTGCAACAAGTCGTGATATT 3876 |||||||| ||||| ||||| |||||||||||||| || |||||||| ||||| || ||| Sbjct 541 ACTACAAATTGGTCTGAAACATTTCCAAATATAACTGCTTCTGCAACGAGTCGAGACATT 600 Query 3877 AGCAATCCAGTAATTGTAGACTATCCATTACCTTTTCTGTATAATAATACACCAAAAGAT 3936 || ||||||||||| || || |||||| |||||||| || |||||||||||||||||||| Sbjct 601 AGTAATCCAGTAATCGTCGATTATCCACTACCTTTTTTGAATAATAATACACCAAAAGAT 660 Query 3937 GTTGGAATATATGATTATGTCGACATAAAGAATGGTACTACTGCATATGGAAAATGTTGG 3996 ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 661 GTTGGAATATACGACTATGTAGACATAAAGAATGGTACTACTGCATATGGAAAATGTTGG 720 Query 3997 GAAAAACGATTTAAGCCTTCAAATGGTATTTTGTATGCTGAAAGTACCTTAAAAGGCAAC 4056 ||||| |||| || ||| |||||||| | | ||||| |||||||| | ||||| || Sbjct 721 GAAAAGAGATTCAAACCTACAAATGGTTTACTATATGCAGAAAGTACTCTTAAAGGAAAT 780 Query 4057 GTTGCTACATCTGAAGCAGCCACAAATAGTAATGTCATGACTCCTATACCAGGTTTAGAA 4116 |||||||| ||||||||||| |||||||||||| | |||||||| ||||| || |||||| Sbjct 781 GTTGCTACTTCTGAAGCAGCTACAAATAGTAATATTATGACTCCAATACCCGGATTAGAA 840 Query 4117 AATGGATATTTTATAAATTCTGCAAATATTGCTGAACGTAATGACAATCAAACATT 4172 ||||| || ||||| ||||||||||||||| |||||| | ||||| ||||||||| Sbjct 841 AATGGCTACTTTATTAATTCTGCAAATATTAGTGAACGCAGTGACATTCAAACATT 896 >seq776 Length=653 Score = 996 bits (1104), Expect = 0.0 Identities = 612/652 (94%), Gaps = 0/652 (0%) Strand=Plus/Minus Query 430 TGTTTTATTGAAGATAGTGACGAAGAAAACGATATAAACCATCTTAAAGATAATGCTAAC 489 |||||||||||||||||||||||||||||||||||||| || | |||| |||||||| Sbjct 652 TGTTTTATTGAAGATAGTGACGAAGAAAACGATATAAATTTCCTGAGAGATCATGCTAAC 593 Query 490 GTTGCTCATCAATTATTGTCTAGTATGGAGTCTTTTGAAGAGTCTTCAGACGAAATTCCA 549 ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 592 ACTGCTCATCAATTACTGTCTAGTATGGAGTCTTTTGAAGAGTCTTCAAACGAAGTTCCA 533 Query 550 AGTGAAACAGAGGCAGGAATACTTGAAGAAATTGGAAGTCGTAGTCAAGTCAGTAATAGC 609 ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| Sbjct 532 AGTGAAACAGAGGCAGGAATACTTGAAGAAATTAGAAGTGGTAGTCAAAGCAGTAATAGC 473 Query 610 AGAATGGGAAGAGGCACAGAACGTATGCTCAAGCGAAAACGAACTAGTTCAATTCTTAAC 669 |||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 472 AGAATGGGAAGAAGCACAGAGCGTATGCTCAAGCGAAAACGAACTAATTCAATTCTTAAC 413 Query 670 AGAGGAATTCTCGCTATTTATGGaaaaaaaTTACAAAAACGACTCATTGGAAACCTTGTG 729 |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 412 AGAGGAATTCTCTCTATTTATGGAAAAAGTTTACAAAAACGACTCCTTGGAAACCTTGTG 353 Query 730 CGATACTCTGGAAGAACCCAAACTAATACAATCAAACCTACAAACGATGAAATTGTACTT 789 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 352 CGACACTCTGGAAGAACCCAAACTAATACAATCAAACCTACAAACGATGAAGTTGTACTT 293 Query 790 AACTCGTATCTTACAGAACAAAGCAATGGAAACTACGGACTTGAAAGGCCATTCCCTATT 849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 AACTCGTATCTTACAGAACAAAGCAATGGAAACTACGGACTTGAAAGGCCATTCCCTATT 233 Query 850 GCTTATCAACAAATGGAACTATGCCATCAAGACTCCTATGAAACTCCTGACGAACGATAC 909 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 232 GCTTATCAACAAATGGAACTCTGTCATCAAGACTCCTATGAAACTCCTGACGAACGATAC 173 Query 910 AGAAGCCTTAGCCAGTTCTTTGCAGCGGTGGAACGAAGAATGGGAATCCTTGCCACTCAG 969 ||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 172 AGAAGTCTTAGCCAATTCTTTGCAGCGGTGGAACGAAGAATGGGAATCCTTTCCACTCAG 113 Query 970 TTATGCGAATCTTATAAAATTAATAGTACAAACGCAAGAAGAATTCTACACGACTCCATC 1029 ||||||||||||||||||||||| || ||||| ||| |||||||| ||||||| |||||| Sbjct 112 TTATGCGAATCTTATAAAATTAACAGCACAAATGCACGAAGAATTTTACACGATTCCATC 53 Query 1030 GAATACCGAGGAAATAAAGCATTTCGTGAAGTGGTTTTTAACCTCAGGAAAG 1081 || | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52 GAGCTCAGAGGAAATAAAGCATTTCGTGAAGTGGTTTTTAACCTCAGGAAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16056919609380