Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_023842.1 Length=5006 Score E Sequences producing significant alignments: (Bits) Value seq789 544 3e-151 seq776 430 4e-117 >seq789 Length=896 Score = 544 bits (602), Expect = 3e-151 Identities = 645/867 (74%), Gaps = 23/867 (3%) Strand=Plus/Plus Query 3265 GCGCAAGTTGATCCGCGTAGTGGAGGCCAAACAGCTGGAGGCATGGGAGCAGGTGGTGCA 3324 || ||||||||||| || | || || ||| | || || || ||||| |||||||| ||| Sbjct 1 GCACAAGTTGATCCACGAACAGGTGGACAAGCTGCAGGTGGTATGGGTGCAGGTGGAGCA 60 Query 3325 GCGAACGATGGAAGGCAAGACATATACGCAGGAGCCCCTCAACCGAACCAACACCATGAA 3384 |||||||||||| | |||||||||| ||||| || ||||| || ||||| || ||| Sbjct 61 GCGAACGATGGACGTCAAGACATATTTAGTGGAGCTCCACAACCAAATCAACATCACGAA 120 Query 3385 CTAGTTTATGGAAAGTCATACCATTTCACACTAACTAATGGACTACCAGATTTCCGTCA- 3443 || |||||||||| || || || |||||||| |||||| ||||||| || | || Sbjct 121 TTAATTTATGGAAAAAGCTATCACTTTACACTAACCAATGGATTACCAGAATTTAGACAT 180 Query 3444 --CGCT-CTAGTTCAGACAAACCATTATGTAGCTGAACAAAGGTTTAAGCATATACATGG 3500 || ||||| | |||| ||| |||| ||||| | || || ||||| ||||| Sbjct 181 TTCGTGGCTAGTGGAAACAAC----TATATAGCACAACAACGTTTCAAACATATTCATGG 236 Query 3501 CATACCTTGGGAAAGACTACTAATGTATATCAGCGAAGGAGAACTAGTGCGCTTATTTCG 3560 ||||| |||||| ||||| |||||||| | || ||||||||||| ||| ||||| | Sbjct 237 GATACCCTGGGAACGACTATTAATGTATGTAAGTGAAGGAGAACTTACTCGCCTATTTAG 296 Query 3561 AGATTATACAGCTGTAAAAGTAGAAGAAGTGGTTTGTGAAGTTTACAGTTTGGGTGTACG 3620 |||||||||||| | ||||| ||||| || |||||||| |||||||||| |||||||| Sbjct 297 AGATTATACAGCCCTTAAAGTTGAAGAGGTTGTTTGTGAGATTTACAGTTTAGGTGTACG 356 Query 3621 TTTACCATTTGTAACTTCTGCTACAACCAGCAGTGTAGCTAATGCCAATGCTCAATATCC 3680 |||||| ||||| |||||||||||||| || ||||||||| || ||||| |||||||| Sbjct 357 TTTACCTTTTGTTACTTCTGCTACAACAAGTTCTGTAGCTAACGCAAATGCACAATATCC 416 Query 3681 TATAGGATGCTTTCATTTTGACAAAGCCTACCAAACGCAATACGATTCAAC---AAACGT 3737 || ||||| ||||||||||| |||| ||| |||| ||| |||| | || || Sbjct 417 AATTGGATGTTTTCATTTTGATGAAGCATACGAAAC-TAAT--TATTCCCCTGACAATGT 473 Query 3738 ACAAGACATAATTAACAAGGCATTGGGTTCTGAATGGAAAAACTTTAACAGACCTTCACA 3797 | ||||||||||| |||||||||||| | ||||||||||| |||||||| | || Sbjct 474 TAATGACATAATTAATAAGGCATTGGGTGCAGAATGGAAAAATGAAAACAGACCAGCTCA 533 Query 3798 ACCTGTTACTACTGAATGGTCAGAAAACTTTCCAAATATTAGTGCATCGACTACCAGCCG 3857 | ||| ||||| | ||||| |||| ||||||||||| | ||| || | || || || Sbjct 534 AATTGTAACTACAAATTGGTCTGAAACATTTCCAAATATAACTGCTTCTGCAACGAGTCG 593 Query 3858 TGACATAAATAACCCAGTTATCGTTGTATATCCTATTCCATATGGCCAAACTAACGTGCC 3917 ||||| | ||| ||||| ||||| | ||||| | || | | | | ||| || Sbjct 594 AGACATTAGTAATCCAGTAATCGTCGATTATCCACTACCTTTTTTGAATAATAATACACC 653 Query 3918 AAAAGATGTAGGAGTATATGATTATGTGGATATTAAAAATGGTACCACAGCTTATGGCAA 3977 ||||||||| ||| |||| || ||||| || || || |||||||| || || ||||| || Sbjct 654 AAAAGATGTTGGAATATACGACTATGTAGACATAAAGAATGGTACTACTGCATATGGAAA 713 Query 3978 ATGTTGGGAAAAGAGATTCAAACCTAAAAACGGAATAATTTACGCGGAGAGTACATTACT 4037 |||||||||||||||||||||||||| ||| || || | || || || ||||| | Sbjct 714 ATGTTGGGAAAAGAGATTCAAACCTACAAATGGTTTACTATATGCAGAAAGTACTCTTAA 773 Query 4038 AGGAGCTTCTGGTACATCATCTCCAGAAACAGC--CGGATA-TCCTTTTATGACACCTAT 4094 |||| | || || || | ||| |||| | ||| | | ||||||| || || Sbjct 774 AGGAAATGTTGCTA------CTTCTGAAGCAGCTACAAATAGTAATATTATGACTCCAAT 827 Query 4095 CCCTGGACTGGAAAATGGATACTTTAT 4121 || ||| | |||||||| |||||||| Sbjct 828 ACCCGGATTAGAAAATGGCTACTTTAT 854 >seq776 Length=653 Score = 430 bits (476), Expect = 4e-117 Identities = 453/604 (75%), Gaps = 0/604 (0%) Strand=Plus/Minus Query 483 GATAATGCTAATACTACTGGTGAACTCTTGTCTGCTATGGAGTCTTTTGAAGAGCCTTCA 542 ||| ||||||| ||| || | || | ||||| ||||||||||||||||||| ||||| Sbjct 604 GATCATGCTAACACTGCTCATCAATTACTGTCTAGTATGGAGTCTTTTGAAGAGTCTTCA 545 Query 543 GATGAAATTCCAAGTGAAGCAGCGACAGGAGCACTTGAAGAAATTAGAAGTCGTAATCAA 602 | ||| ||||||||||| ||| | ||||| ||||||||||||||||||| ||| |||| Sbjct 544 AACGAAGTTCCAAGTGAAACAGAGGCAGGAATACTTGAAGAAATTAGAAGTGGTAGTCAA 485 Query 603 CTCGGTAACACAAGATTGGGAAGACATGCTGAAAGAACACTCAACCGAAGAAGAAANNNN 662 | |||| | ||| |||||||| | || | | ||||| |||| | ||| Sbjct 484 AGCAGTAATAGCAGAATGGGAAGAAGCACAGAGCGTATGCTCAAGCGAAAACGAACTAAT 425 Query 663 NNNNNNNNNNNNNNNNNNNTTCTCAGCTTTTATTCAAAAAGATTGCAAAAACGACTCGTT 722 ||||| ||||| |||||| || |||||||||||| || Sbjct 424 TCAATTCTTAACAGAGGAATTCTCTCTATTTATGGAAAAAGTTTACAAAAACGACTCCTT 365 Query 723 GGAAACCTTGTACGAAACAGTGGAAGAACCCAAATTAGTTCAATCCAGCCTAGCCACGAT 782 ||||||||||| ||| || |||||||||||||| || | ||||| | |||| ||||| Sbjct 364 GGAAACCTTGTGCGACACTCTGGAAGAACCCAAACTAATACAATCAAACCTACAAACGAT 305 Query 783 GAAGTACTACTTAACGCTCACCTTGCAAAACAAAGCCAAGGAAACTACGGGCTTGAAAGG 842 ||||| |||||||| | | ||| || |||||||| | ||||||||||| ||||||||| Sbjct 304 GAAGTTGTACTTAACTCGTATCTTACAGAACAAAGCAATGGAAACTACGGACTTGAAAGG 245 Query 843 CCATTCCCTGTCAGTTATCAGCAAATGGAACTCTGTCATAAAGACGCCTTTGAAACTCCT 902 ||||||||| | |||||| |||||||||||||||||| ||||| ||| |||||||||| Sbjct 244 CCATTCCCTATTGCTTATCAACAAATGGAACTCTGTCATCAAGACTCCTATGAAACTCCT 185 Query 903 ATCGAACGAGAAAGAAGCCTCCACCAATTCTTTCGAGCGGTGGAACGAAGAATGGGAATC 962 ||||||| | ||||| || |||||||||| ||||||||||||||||||||||||| Sbjct 184 GACGAACGATACAGAAGTCTTAGCCAATTCTTTGCAGCGGTGGAACGAAGAATGGGAATC 125 Query 963 CTCGCAGATCAGTTATGTAGAGCTTCTGAGGATAATACAGTTAATGCAAGAAGAATTCTA 1022 || | ||||||||| | ||| | | ||| | |||||| |||||||| || Sbjct 124 CTTTCCACTCAGTTATGCGAATCTTATAAAATTAACAGCACAAATGCACGAAGAATTTTA 65 Query 1023 CACGACTCCATTGAGCTCCGAAGAAACCAAAACTTTCGTGAAATGGTTTTTGGCATCAGG 1082 ||||| ||||| |||||| || |||| || ||||||||| |||||||| | ||||| Sbjct 64 CACGATTCCATCGAGCTCAGAGGAAATAAAGCATTTCGTGAAGTGGTTTTTAACCTCAGG 5 Query 1083 AAAG 1086 |||| Sbjct 4 AAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15906525982110