Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq323 208 3e-50 >seq323 Length=548 Score = 208 bits (230), Expect = 3e-50 Identities = 133/145 (92%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 2621 TTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGAA 2680 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| | Sbjct 9 TTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGGA 68 Query 2681 CGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCA 2740 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 69 CGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCA 128 Query 2741 TTGCTTATTATGTTCATCCCGTCAA 2765 ||||||||||||||||||||||||| Sbjct 129 TTGCTTATTATGTTCATCCCGTCAA 153 Score = 98.7 bits (108), Expect = 4e-17 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 2773 ACAGCATGCCTCGTTATGGAAGGCGCGGAGTTTAGCGAAAACATTATCAATGGCGTCGAG 2832 || || || ||| | ||||||||||| || |||| ||||||||||| |||||||||||| Sbjct 391 ACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAG 450 Query 2833 CGCCCGGTTAACGCCGCTGAGCTCTTCGCGTACACCCTGCGT 2874 || |||||||| |||||||| | ||||||| || ||||| Sbjct 451 CGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTTCCTTGCGT 492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19361986217808