Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq323 181 4e-42 seq4223 152 2e-33 seq1612 107 7e-20 >seq323 Length=548 Score = 181 bits (200), Expect = 4e-42 Identities = 134/154 (87%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 2099 GTCTGGATTGCTACCGACCGTTCACGCGCTCGCCG-TGCTATCGAGGCTTGCGTATATGG 2157 || ||||||||||| ||||| || || ||||| || ||| | ||||||||||| ||||| Sbjct 8 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGC-GTTGAGGCTTGCGTTTATGG 66 Query 2158 AACACTGGACTTTGTCGGGTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGT 2217 || ||||||||||| || || |||||||||||||||||||||||||||||| ||||||| Sbjct 67 GACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGT 126 Query 2218 CATTGCTTATTACGTTCATCCCGTTAACATCCAA 2251 |||||||||||| ||||||||||| ||||| ||| Sbjct 127 CATTGCTTATTATGTTCATCCCGTCAACATTCAA 160 Score = 111 bits (122), Expect = 6e-21 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 2252 ACCGCCTGTCTCATCATGGAAGGTGCTGAGTTTACCGAAAACATCGTCAATGGTGTTGAA 2311 || |||||||||||||||||||| ||||| ||||| |||||||| | ||||| || || Sbjct 391 ACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAG 450 Query 2312 CGCCCCGTTAAAGCCTCTGAACTGTTCGCCTTCACTCTTCTTGTTCGCGCCGGAAACAAA 2371 || || ||||||||| ||||| ||||||| || | | | ||| ||||| ||||||| Sbjct 451 CGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTTCCTTGCGTGTACGCGCAGGAAACACT 510 Query 2372 GATCTTATCGGTCACGCTGAAACAAACATCCGTGAA 2407 || || | | |||| ||| |||| | ||| || Sbjct 511 GACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAA 546 >seq4223 Length=541 Score = 152 bits (168), Expect = 2e-33 Identities = 144/184 (78%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 1104 CAGTCCGGTACTCCCAAGACGCATTCTCTCGCGCTGGCTGGCTCTGGCCTGTGGACTCAA 1163 |||| || ||| | || ||||| || || || |||| ||| | |||||||| || | | Sbjct 1 CAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTA 60 Query 1164 AGGGTGAACCCCTTAAAGCTACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATACG 1223 | || || || |||||||||||| ||||||||||| || ||||| || |||||||||| Sbjct 61 AAGGGGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACG 120 Query 1224 TTAACAAAAAATCAGATATTGACATGGCCGTAAAAGGCCTAGGGAATAAAGAATGGAACA 1283 |||||||||| |||||||| ||| | || | ||||| ||||| |||||||||||||| Sbjct 121 TTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACA 180 Query 1284 ATTC 1287 | || Sbjct 181 ACTC 184 Score = 109 bits (120), Expect = 2e-20 Identities = 120/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 1313 CCCAAGAAAGTGTTCAGAATACGAATGTCTCGCAATTTCGGAATGAAACTGTTATCAATG 1372 |||||||| |||||||||| ||||| ||||| ||||| |||||| || | ||||| Sbjct 384 CCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATG 443 Query 1373 GCTCACCTGTCAGCGGAAACCCTGATGGAACTGACCCAAG-TGGGTTACGACGTGACCCC 1431 | | ||||| |||| | | || |||| |||||| |||||||||||| ||| || Sbjct 444 ACAAATCTGTCCACGGAGTGCTTAATCCAACTT-CCCAAGCTGGGTTACGACGCGACGCC 502 Query 1432 GTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAG 1468 ||||||| | || |||||||||||||| || | |||| Sbjct 503 GTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAG 539 >seq1612 Length=559 Score = 107 bits (118), Expect = 7e-20 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 5095 ACATCACGCGAAAATACTAAGGATACTGTCTATGCTCAAAATGAAATGCTCGCGTATAAC 5154 || |||||| | ||||| || || || ||||| |||||||| ||||| || ||| | Sbjct 393 ACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAA 452 Query 5155 CAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAG 5214 || || ||||||| | ||||||| ||||| | |||||| | | || |||| || Sbjct 453 CAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACCCCAATCTTTCCAAGCAA 512 Query 5215 CAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAAC 5261 || || ||| || |||||||| |||||||||||||| |||||||| Sbjct 513 CAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAAC 559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17733319199160