Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_001422.1 Length=5386 Score E Sequences producing significant alignments: (Bits) Value seq225 342 2e-90 seq1407 334 3e-88 seq4223 327 4e-86 seq1612 309 1e-80 seq323 280 5e-72 >seq225 Length=560 Score = 342 bits (378), Expect = 2e-90 Identities = 191/192 (99%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 3747 TCTTCTCATATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCT 3806 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTTCTCATATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCT 60 Query 3807 GGTGTGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGATACTTGGAACAATTTC 3866 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGTGGGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGATACTTGGAACAATTTC 120 Query 3867 TGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCGTCAGGA 3926 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCGTCAGGA 180 Query 3927 TTGACACCCTCC 3938 |||||||||||| Sbjct 181 TTGACACCCTCC 192 Score = 342 bits (378), Expect = 2e-90 Identities = 191/192 (99%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 3953 CATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCGTTCTTATTACCCTTCTGAATGTCA 4012 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 369 CATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCGTTCTTATTACCCTTCTGAATGTCA 428 Query 4013 CGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATTGAGGCTTGTGG 4072 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 429 CGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATTGAGGCTTGTGG 488 Query 4073 CATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGCAT 4132 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 CATTTCTTCTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGCAT 548 Query 4133 CAAGCTCTTGGA 4144 |||||||||||| Sbjct 549 CAAGCTCTTGGA 560 >seq1407 Length=543 Score = 334 bits (370), Expect = 3e-88 Identities = 187/188 (99%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 965 TTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCC 1024 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 TTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCC 415 Query 1025 GAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTT 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 GAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTT 475 Query 1085 ATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGC 1144 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 ATTTCCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGC 535 Query 1145 GCTCTCCG 1152 |||||||| Sbjct 536 GCTCTCCG 543 Score = 331 bits (366), Expect = 3e-87 Identities = 186/188 (99%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 777 GGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCGGAA 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 GGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAA 60 Query 837 GGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGC 896 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGAGAGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGC 120 Query 897 CGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAAC 956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAAC 180 Query 957 AATTTTAA 964 |||||||| Sbjct 181 AATTTTAA 188 >seq4223 Length=541 Score = 327 bits (362), Expect = 4e-86 Identities = 183/184 (99%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 4903 CAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTA 4962 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTA 60 Query 4963 AAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACG 5022 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAGGGGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACG 120 Query 5023 TTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACA 5082 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACA 180 Query 5083 ACTC 5086 |||| Sbjct 181 ACTC 184 Score = 325 bits (360), Expect = 1e-85 Identities = 182/183 (99%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 5087 ACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAA 5146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 ACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAA 418 Query 5147 CTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTAC 5206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 419 CTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTCC 478 Query 5207 CAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGA 5266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 CAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGA 538 Query 5267 GAT 5269 ||| Sbjct 539 GAT 541 >seq1612 Length=559 Score = 309 bits (342), Expect = 1e-80 Identities = 173/174 (99%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 3470 GTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGC 3529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 386 GTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGC 445 Query 3530 TTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTC 3589 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 446 TTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACCCCAATCTTTC 505 Query 3590 CAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAAC 3643 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 506 CAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAAC 559 Score = 241 bits (266), Expect = 4e-60 Identities = 135/136 (99%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 3271 GAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTG 3330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTG 60 Query 3331 CTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGC 3390 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTGGGGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGC 120 Query 3391 TTACTAAAATGCAACT 3406 |||||||||||||||| Sbjct 121 TTACTAAAATGCAACT 136 >seq323 Length=548 Score = 280 bits (310), Expect = 5e-72 Identities = 158/160 (99%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 506 TAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGT 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGT 60 Query 566 TTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGC 625 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 61 TTATGGGACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGC 120 Query 626 TGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAA 665 |||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAA 160 Score = 280 bits (310), Expect = 5e-72 Identities = 157/158 (99%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 666 ACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAG 725 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 391 ACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAG 450 Query 726 CGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACT 785 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 451 CGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTTCCTTGCGTGTACGCGCAGGAAACACT 510 Query 786 GACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAA 823 |||||||||||||||||||||||||||||||||||||| Sbjct 511 GACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAA 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17122156447980