Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq323 223 1e-54 >seq323 Length=548 Score = 223 bits (246), Expect = 1e-54 Identities = 140/151 (93%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 2620 TTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGAA 2679 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| | Sbjct 9 TTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGGA 68 Query 2680 CGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCA 2739 ||||||||||||| || || |||||||||||||||||||||||||||||||||||||||| Sbjct 69 CGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCA 128 Query 2740 TTGCTTATTATGTTCATCCCGTCAACATTCA 2770 ||||||||||||||||||||||||||||||| Sbjct 129 TTGCTTATTATGTTCATCCCGTCAACATTCA 159 Score = 105 bits (116), Expect = 3e-19 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 2772 ACAGCATGCCTCGTTATGGAAGGCGCGGAGTTTAGCGAAAACATTATTAATGGCGTCGAG 2831 || || || ||| | ||||||||||| || |||| |||||||||||||||||||||||| Sbjct 391 ACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAG 450 Query 2832 CGCCCGGTTAACGCCGCTGAGCTCTTCGCGTACACCCTGCGTATTAAGGCAGGATTCAAA 2891 || |||||||| |||||||| | ||||||| || ||||| | |||||| || Sbjct 451 CGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTTCCTTGCGTGTACGCGCAGGAAACACT 510 Query 2892 GAAACTGTAATTGATGCCGAAGAGAATGCTCGTCAGAA 2929 || | | | ||| || ||||| || | ||||| || Sbjct 511 GACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAA 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19368385816624