Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq323 203 1e-48 seq4223 167 8e-38 seq1612 102 3e-18 seq1407 93.3 1e-15 >seq323 Length=548 Score = 203 bits (224), Expect = 1e-48 Identities = 136/152 (89%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 2091 GTATGGATTGCCACTGACCGCTCCCGTGCTCGCCGCGCTATTGAGGCCTGCGTATATGGT 2150 || |||||||| ||||||||||| |||||||| ||| ||||||| ||||| ||||| Sbjct 8 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGG 67 Query 2151 ACATTGGACTTTGTCGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2210 || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 68 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 127 Query 2211 ATTGCTTATTATGTTCATCCCGTTAACATCCA 2242 ||||||||||||||||||||||| ||||| || Sbjct 128 ATTGCTTATTATGTTCATCCCGTCAACATTCA 159 Score = 123 bits (136), Expect = 9e-25 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 2244 ACAGCATGTCTTATTATGGAAGGCGCCGAGTTCACCGAAAATATTATCAATGGTATTGAC 2303 || || ||||| || ||||||||||| || || || ||||| ||||| ||||| | || Sbjct 391 ACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAG 450 Query 2304 CAGCCAGTTAAGGCCGCTGAACTATTCGCTTTTACCCTGCGTGTACGCGCCGGAAACACT 2363 | || ||||| ||||||||| | ||||| ||| || ||||||||||||| ||||||||| Sbjct 451 CGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTTCCTTGCGTGTACGCGCAGGAAACACT 510 Query 2364 GACCATGTTACACATGCAGAAACTAACGTACGTGAA 2399 ||| | |||| | |||||| ||||| ||| || Sbjct 511 GACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAA 546 >seq4223 Length=541 Score = 167 bits (184), Expect = 8e-38 Identities = 146/182 (80%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 1106 GTCCGGTACTCCCAAGACGCATTTTCGCGCGCTGGCTGGCTCTGGCCCGTTGATACAAAG 1165 || || ||| | || ||||| ||||| || |||| ||| | ||||| |||||| | || Sbjct 3 GTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAA 62 Query 1166 GGCGAACCTCTTAAAGCTACCTCGTATATGGCTGTCGGCTTCTACGTCGCTAAATACGTT 1225 || || || |||||||||||| ||||||||||| || ||||| || |||||||||||| Sbjct 63 GGGGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTT 122 Query 1226 AACAAAAAATCAGATATTGACATGGCCTCTAAAGGTCTAGGGAATAAAGAATGGAACAAT 1285 |||||||| |||||||| ||| | || ||||||||||||| ||||||||||||||| Sbjct 123 AACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAAC 182 Query 1286 TC 1287 || Sbjct 183 TC 184 Score = 109 bits (120), Expect = 2e-20 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 1288 ACTCAAAACCAAAATCAACCTGCTGCCCAAGAAAATTTTTCGCATCAGGATGTCTCGCAA 1347 ||| |||||||| | || || |||||||| | || | ||||| ||| ||||| Sbjct 359 ACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAA 418 Query 1348 CTTCGGAATGAAGCTGCACACAATGAGTCACCTCTCAGCGGAAACTCTAATCCAACTGAC 1407 |||||| ||||| ||| |||||||| | || || |||| |||||||||| | Sbjct 419 CTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACT-TC 477 Query 1408 CCAAG-TGGGCTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAG 1466 ||||| |||| ||||||| ||| ||||||||| | || |||||||||||||| || | || Sbjct 478 CCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAG 537 Query 1467 AG 1468 || Sbjct 538 AG 539 >seq1612 Length=559 Score = 102 bits (112), Expect = 3e-18 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4818 GATTATCTTGCTTCTGCATTCCCCGACCTCAACCCGTGGGAACGTGCTGGCGCTGGTGCT 4877 |||||||||||| ||||||| || || || || | ||||| |||||||| |||| |||| Sbjct 15 GATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGGGCTGATGCT 74 Query 4878 TCGTCTGCTGGCATGGTTGACGCTGGCTTCCAAAACCAAAAAGA 4921 || |||||||| ||||||||||| || || | || |||||||| Sbjct 75 TCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGA 118 Score = 102 bits (112), Expect = 3e-18 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 5013 TCCCGGCAAAATACTAAGGATGCTGTCTATGCTCAAAACGAGATGCTCGAATATAACCAA 5072 || || || ||||| || || || ||||| ||||| |||||||| | ||| | || Sbjct 396 TCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAG 455 Query 5073 AAAGAATCTATGTCACGCGTTGGCTCTATTCTCGAAAACACAAGCCTCACCAAACAACAA 5132 || || |||| | ||||||| |||||| | |||||| | | || |||| ||||| Sbjct 456 AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACCCCAATCTTTCCAAGCAACAG 515 Query 5133 CAAACTTCTGAAATTATGCGGCAGATGCTTACTCAAGCTCAAAC 5176 || ||| || |||||||| || |||||||||||||||||||| Sbjct 516 CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAAC 559 >seq1407 Length=543 Score = 93.3 bits (102), Expect = 1e-15 Identities = 118/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 2513 AGGGGCTTCGGCCCCTCTATTTAAGGATATAAAATGTCTAACGTTCAAACTTCCGCTGAC 2572 |||||||||||||||| || || |||||| | |||||||| |||||||| ||| || Sbjct 360 AGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAG 418 Query 2573 CGCATTCCTAACGACCTTTCTCACCTCGTCTTCGAGGCTGGTAAAATCGGCCGTTTAAAA 2632 || || || | |||||||| || || | |||| |||||| | || || ||| | | Sbjct 419 CGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATT 478 Query 2633 ACTATCTCCTGGACTCCAGTTGTCGCTGGCGACTCATTTGA 2673 | || || ||||| ||| ||||||||||||| || || Sbjct 479 TCCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGA 519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17442136945980