Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq323 235 2e-58 seq1612 80.6 1e-11 >seq323 Length=548 Score = 235 bits (260), Expect = 2e-58 Identities = 145/155 (94%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 2640 AAAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTAT 2699 ||| |||||||||||||||||||| ||||| |||||||| ||||||||||| |||||| Sbjct 5 AAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTAT 64 Query 2700 GGAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCC 2759 || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 65 GGGACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCC 124 Query 2760 GTCATTGCTTATTATGTTCATCCCGTCAACATTCA 2794 ||||||||||||||||||||||||||||||||||| Sbjct 125 GTCATTGCTTATTATGTTCATCCCGTCAACATTCA 159 Score = 147 bits (162), Expect = 8e-32 Identities = 95/104 (91%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 2796 ACGGCCTGCCTCATCATGGAAGGCGCTGAGTTTACGGAAAACATTGTTAATGGCGTCGAG 2855 |||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 391 ACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAG 450 Query 2856 CGTCCGGTTAAAGCCGCTGAGCTCTTCGCGTACACCTTGCGTGT 2899 |||||||||||||||||||| | ||||||| |||||||||| Sbjct 451 CGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTTCCTTGCGTGT 494 >seq1612 Length=559 Score = 80.6 bits (88), Expect = 1e-11 Identities = 85/112 (76%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 5632 TTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAGTTTATGCTCAGA 5691 ||||||| |||||||| || ||||| ||| |||||||||| || || ||||| || | Sbjct 373 TTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAA 432 Query 5692 ATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGTCTAT 5743 ||||||||||| | | | || ||||||| || ||||||| |||||| Sbjct 433 ATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19301190029056