Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq323 217 5e-53 seq4223 159 1e-35 seq1612 100 1e-17 seq1407 98.7 3e-17 seq225 98.7 3e-17 >seq323 Length=548 Score = 217 bits (240), Expect = 5e-53 Identities = 140/153 (92%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 2102 GTATGGATTGCAACTGACCGCTCCCGTGCTCGCCGCGCTATTGAGGCTTGCGTTTATGGA 2161 || |||||||| ||||||||||| |||||||| ||| ||||||||||||||||||| Sbjct 8 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGG 67 Query 2162 ACTCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTATTGAGTTTATTGCTGCCGTC 2221 || ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 68 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 127 Query 2222 ATTGCTTATTATGTTCATCCCGTTAACATTCAA 2254 ||||||||||||||||||||||| ||||||||| Sbjct 128 ATTGCTTATTATGTTCATCCCGTCAACATTCAA 160 Score = 178 bits (196), Expect = 5e-41 Identities = 134/158 (85%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 2255 ACGGCATGTCTTATTATGGAAGGCGCTGAATTCACCGAAAACATCATTAATGGTGTCGAT 2314 ||||| ||||| || ||||||||||||||||| || |||||||| |||||||| ||||| Sbjct 391 ACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAG 450 Query 2315 GCCCCGGTTAAAGCCGCTGAACTCTTCGCGTTTACCTTGCGTGTACGCGCCGGAAACACT 2374 |||||||||||||||||| | ||||||||| |||||||||||||||| ||||||||| Sbjct 451 CGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTTCCTTGCGTGTACGCGCAGGAAACACT 510 Query 2375 GAGCTTATTACTTACGCAGAAAACAATGCGCGTGAAAA 2412 || || ||||| |||||||| | || | |||| |||| Sbjct 511 GACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAA 548 >seq4223 Length=541 Score = 159 bits (176), Expect = 1e-35 Identities = 145/180 (81%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 1296 TAAAAACGCAGATGGCTCTTTTACCAAAGAAACTATTTCGAATTCGAATGAGCCGCAACT 1355 ||||||| || || | || | || ||||| || || |||| ||||||||||||||| Sbjct 361 TAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACT 420 Query 1356 TCGGGATGAAACTACTCCCAATGACGACGCTGACCGCGGAGTGTTTAATCCAACTGACCC 1415 ||||||||||| | ||| ||||||| | ||| || ||||||| ||||||||||| ||| Sbjct 421 TCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACT-TCCC 479 Query 1416 AAG-TGGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAG 1474 ||| |||||||||||| ||| ||||||||| | || |||||||||||||| || | |||| Sbjct 480 AAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAG 539 Score = 120 bits (132), Expect = 1e-23 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 1110 CAGTCCGGTATTCTCAGGATGCTTTCTCTCGCGCTGGATGGCTCTGGCCTGTCGATACAA 1169 |||| || || | ||||| ||||| || || |||| ||| | |||||||| ||| | | Sbjct 1 CAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTA 60 Query 1170 AGGGTGAACCCCTTAAATCCACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATACG 1229 | || || || |||||| | ||| ||||||||||| || ||||| || |||||||||| Sbjct 61 AAGGGGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACG 120 Query 1230 TTAATAAAAAATCTGATGTTGACATAGCCGCAAAAGGCTTAGGGAATCAAAAATGGAAC 1288 |||| ||||| || ||| | ||| | || || ||||| |||| | || |||||||| Sbjct 121 TTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAAC 179 >seq1612 Length=559 Score = 100 bits (110), Expect = 1e-17 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 4800 AAGGATACGAAAGATTATCTTGCTTCTGCGTTCCCCGAACTCAACCCGTGGGAACGTGCT 4859 |||||||| |||||||||||| |||| || || || || || | ||||| |||||| Sbjct 3 AAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCT 62 Query 4860 GGCGCTGGTGCTTCTTCTGCTGGAATGGTTGATGCGGGATTCCAAAACCAAAAGGAATTA 4919 || |||| |||||| |||||||| |||||||| || ||||| | || ||||| || | Sbjct 63 GGGGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTT 122 Query 4920 ACTCGCATGCAGCTTGAC 4937 ||| ||||| || ||| Sbjct 123 ACTAAAATGCAACTGGAC 140 Score = 98.7 bits (108), Expect = 3e-17 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 4992 ATCCAGTCTGTTACTTCTCGGCAAAATACTAAGGACTCTGTGTATGCTCAAAACGAAATG 5051 || ||||| | ||||| || || ||||| || ||| || ||||| ||||| || ||| Sbjct 381 ATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATG 440 Query 5052 CTCCAATACAACCAAAAAGAATCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGC 5111 || || | || || || |||| | ||||||| ||||| | |||||| | | Sbjct 441 CTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACCCCAAT 500 Query 5112 CTCACCAAACAACAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAAC 5170 || |||| ||||| || ||| || |||||||| |||||||||||||| |||||||| Sbjct 501 CTTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAAC 559 >seq1407 Length=543 Score = 98.7 bits (108), Expect = 3e-17 Identities = 119/161 (74%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 2523 AGGGGCTTCGGCCCCTCTATTTAAGGATACAAAATGTCTAACGTACAAACTTCCGCTGAA 2582 |||||||||||||||| || || |||||| | |||||||| | |||||| ||| || Sbjct 360 AGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAG 418 Query 2583 CGTATTCCGCATGACCTCTCACATCTGGTATTCGAAGCTGGTAAAATCGGACGCCTTAAA 2642 ||||| ||||||||||| || ||||| | ||| |||||| | || || || |||| Sbjct 419 CGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATT 478 Query 2643 ACTATCTCCTGGACTCCTGTTGTCGCTGGTGATTCTTACGA 2683 | || || ||||| ||| ||||||| || || | ||| Sbjct 479 TCCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGA 519 >seq225 Length=560 Score = 98.7 bits (108), Expect = 3e-17 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 5334 ACCGCCAAGGATGTATCAAATGTCATTAGTGACGCATCTTCTGGTATTGTTGATTATTTT 5393 || || |||||| | || |||||| | | ||| || |||||||| |||||| |||| Sbjct 19 ACTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCTGGTGGGGTTGATATTTTT 78 Query 5394 CGTGGCGTTGATAAAGCTGTCGCGGATACTTGGAACAATTATTTCAAAGATGGCAAATCG 5453 | ||| ||||||||||||| || |||||||||||||||| | ||||| || ||| | Sbjct 79 CATGGTATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAGCT 138 Query 5454 GATGGGATAAGCTCAAA 5470 ||||| || |||| || Sbjct 139 GATGGTATTGGCTCTAA 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17442136945980