Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq323 210 8e-51 seq1612 105 3e-19 >seq323 Length=548 Score = 210 bits (232), Expect = 8e-51 Identities = 137/151 (91%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 2620 TTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATGGAG 2679 |||||||||| || |||||| ||||| |||||||| || |||||||| |||||||| Sbjct 9 TTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGGA 68 Query 2680 CGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCA 2739 ||||||||||||| || || |||||||||||||||||||||||||||||||||||||||| Sbjct 69 CGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCA 128 Query 2740 TTGCTTATTATGTTCATCCCGTCAACATTCA 2770 ||||||||||||||||||||||||||||||| Sbjct 129 TTGCTTATTATGTTCATCCCGTCAACATTCA 159 Score = 109 bits (120), Expect = 2e-20 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 2772 ACAGCATGCCTCGTTATGGAAGGCGCGGAGTTTAGCGAAAACATTATTAATGGCGTCGAG 2831 || || || ||| | ||||||||||| || |||| |||||||||||||||||||||||| Sbjct 391 ACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAG 450 Query 2832 CGTCCGGTTAACGCCGCTGAGCTCTTCGCGTACACCCTGCGTATTAAGGCAGGATTCAAA 2891 ||||||||||| |||||||| | ||||||| || ||||| | |||||| || Sbjct 451 CGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTTCCTTGCGTGTACGCGCAGGAAACACT 510 Query 2892 GAAACTGTAATTGATGCCGAGGAAAATGCTCGTCAGAA 2929 || | | | ||| || || ||||| | ||||| || Sbjct 511 GACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAA 548 >seq1612 Length=559 Score = 105 bits (116), Expect = 3e-19 Identities = 128/172 (74%), Gaps = 12/172 (7%) Strand=Plus/Plus Query 5471 GAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACGTG 5530 |||||| || |||||||| | || || || || |||||||| || | ||||| |||| Sbjct 1 GAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTG 60 Query 5531 CTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACAAA 5584 |||| |||||||||||| |||| || || || | ||| | ||||| |||| Sbjct 61 CTGGGGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAAT---CAAA 114 Query 5585 AAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCA 5636 ||||| | ||||||||||||||| || ||||| || |||||| ||||||| Sbjct 115 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCA 166 Score = 80.6 bits (88), Expect = 1e-11 Identities = 85/112 (76%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 5657 TTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATTCTGTTTATGCCCAGA 5716 |||||||||||||||| || || || |||||||||||||| || || ||||| || | Sbjct 373 TTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAA 432 Query 5717 ATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCCAT 5768 ||||||||||| ||| | || ||||| || ||||||||||| || Sbjct 433 ATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19384384813664