Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_004290.1 Length=5234 Score E Sequences producing significant alignments: (Bits) Value seq10453 167 8e-38 seq8757 167 8e-38 seq5543 159 1e-35 seq6827 158 4e-35 seq15217 138 4e-29 seq138 132 2e-27 seq12565 131 6e-27 seq5122 131 6e-27 seq4938 122 3e-24 seq4836 122 3e-24 seq2514 114 4e-22 seq6973 102 3e-18 seq12098 91.5 5e-15 seq10877 91.5 5e-15 seq2689 91.5 5e-15 seq9858 86.0 2e-13 seq13390 80.6 9e-12 >seq10453 Length=6071585 Score = 167 bits (184), Expect = 8e-38 Identities = 94/95 (99%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 4592 TTCTGATCGTGCAGGTTTAGGATCTATTGGATTACCAGGCCCCACGAAATCAGTGCCAGG 4651 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1101496 TTCTGATCGTGCAGGTTTAGGATCTATTGGATTACCAGGCCCAACGAAATCAGTGCCAGG 1101555 Query 4652 TAATACTGCACCTTTGCTACTCGTGTGATCAATTA 4686 ||||||||||||||||||||||||||||||||||| Sbjct 1101556 TAATACTGCACCTTTGCTACTCGTGTGATCAATTA 1101590 >seq8757 Length=3513161 Score = 167 bits (184), Expect = 8e-38 Identities = 94/95 (99%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 3269 AGATTTTCATCACGTATTGCTCCAAGTTCATCTATGGATGATACAACCATTGGTTCATTA 3328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2061044 AGATTTTCATCACGTATTGCTCCAAGTTCATCTATGGATGATACAACCATTGGTTCATTA 2060985 Query 3329 GCTTGAAATTCTTTAGGACGTACGTCAATACCTTG 3363 |||||||||||||||||||||||||||| |||||| Sbjct 2060984 GCTTGAAATTCTTTAGGACGTACGTCAACACCTTG 2060950 >seq5543 Length=3287785 Score = 159 bits (176), Expect = 1e-35 Identities = 93/96 (97%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 1706 ATGATCCAAAAAATGAAAAGTTGTATACTGCTGCTATTTCTTTATATGTGCGTGACATTA 1765 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1483764 ATCATCCAAAAAATGAAAAGTTGTATACTGCTGCTATTTCTTTATATGTGCGTGACATTA 1483705 Query 1766 ATGAAATGTCTTTGAATGATTTCTACTTACAGACTT 1801 ||||||||||||||||||||||| | |||||||||| Sbjct 1483704 ATGAAATGTCTTTGAATGATTTCGATTTACAGACTT 1483669 >seq6827 Length=2043836 Score = 158 bits (174), Expect = 4e-35 Identities = 92/95 (97%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 3438 TATTTGTTTGAAAAGCAATACGAGGGGTAAATGCTGTTACGCGTACATTACATTCTTCAA 3497 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1841623 TATTTGTTTGAAAAGCAATACGAGGGGTAAATGCTGTTACGCGCACGTTACATTCTTCAA 1841564 Query 3498 TGCAACTTCCAGGTGGTAATTGAGCAAATTCATTT 3532 | ||||||||||||||||||||||||||||||||| Sbjct 1841563 TACAACTTCCAGGTGGTAATTGAGCAAATTCATTT 1841529 >seq15217 Length=13330596 Score = 138 bits (152), Expect = 4e-29 Identities = 94/104 (90%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 1257 AAAAACGGAAGACTTCAAAAAGGGACTTC--GCAAGCCTCTACGCAAGTCGAAGTTCATT 1314 ||||||| || ||| ||||| | |||| | ||||||||||||||||||||||||||| Sbjct 1414453 AAAAACGAAACACT--AAAAAAGAACTTAAAGAAAGCCTCTACGCAAGTCGAAGTTCATT 1414510 Query 1315 ACCGAACTCGATGACACCGACTGGGCAAATGTTTTCTTATACTT 1358 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1414511 ACCGAACTCGATGACACCGACTGGGCAAATGTTTTCTTATACTT 1414554 >seq138 Length=1774441 Score = 132 bits (146), Expect = 2e-27 Identities = 76/78 (97%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 3378 GGCCTGTAGCATGAAGAATAAATTGATTTTGATTTAGAGTAGCAAGACCAGTATTAGAAC 3437 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646470 GGTCTGTAGCATGAAGAATAAATTGATTTTGATTTAGAGTAGCAAGACCAGTATTAGAAC 646411 Query 3438 TATTTGTTTGAAAAGCAA 3455 ||||||||| |||||||| Sbjct 646410 TATTTGTTTAAAAAGCAA 646393 Score = 122 bits (134), Expect = 3e-24 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 3378 GGCCTGTAGCATGAAGAATAAATTGATTTTGATTTAGAGTAGCAAGACCAGTATTAGAAC 3437 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646377 GGTCTGTAGCATGAAGAATAAATTGATTTTGATTTAGAGTAGCAAGACCAGTATTAGAAC 646318 Query 3438 TATTTGTTTGAA 3449 ||||||||| || Sbjct 646317 TATTTGTTTAAA 646306 >seq12565 Length=948663 Score = 131 bits (144), Expect = 6e-27 Identities = 77/80 (96%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 2228 ATATGAAGAAATTATGTGAGGGGTGTCCATTCAATGTTAGCGTAAAACATCAATCAGATG 2287 ||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 852413 ATAAGAAGAAATTATGTGAGGGGTGTCCATTCAATTTTAGTGTAAAACATCAATCAGATG 852472 Query 2288 GAATTGTTGCCAGGACACCT 2307 |||||||||||||||||||| Sbjct 852473 GAATTGTTGCCAGGACACCT 852492 Score = 80.6 bits (88), Expect = 9e-12 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 2259 CAATGTTAGCGTAAAACATCAATCAGATGGAATTGTTGCCAGGACACCT 2307 |||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 852342 CAATTTTAGTGTAAAACATCAATCAGATGGAATTGTTGCCAGGACACCT 852390 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 2228 ATATGAAGAAATTATGTGAGGGGTGTCCATTCAATGTTAGCGTAAAACATC 2278 ||| ||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 852515 ATAAGAAGAAATTATGTGAGGGGTGTCCATTCAATTTTAGTGTAAAACATC 852565 >seq5122 Length=4416684 Score = 131 bits (144), Expect = 6e-27 Identities = 90/102 (88%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1257 AAAAACGGAAGACTTCAAAAAGGGACTTCGCAAGCCTCTACGCAAGTCGAAGTTCATTAC 1316 ||||| | |||| | ||||| | | | ||||||||||||||||||||||||||||| Sbjct 2943862 AAAAAGGAAAGATTAAAAAAATGAATATTAAAAGCCTCTACGCAAGTCGAAGTTCATTAC 2943803 Query 1317 CGAACTCGATGACACCGACTGGGCAAATGTTTTCTTATACTT 1358 |||||||||||||||||||||||||||||||||||||||||| Sbjct 2943802 CGAACTCGATGACACCGACTGGGCAAATGTTTTCTTATACTT 2943761 >seq4938 Length=7022613 Score = 122 bits (134), Expect = 3e-24 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1273 AAAAAGGGACTTCGCAAGCCTCTACGCAAGTCGAAGTTCATTACCGAACTCGATGACACC 1332 ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5722198 AAAAAGGGACTACAAAAGCCTCTACGCAAGTCGAAGTTCATTACCGAACTCGATGACACC 5722257 Query 1333 GACTGGGCAAATGTTTT 1349 |||||||||||| |||| Sbjct 5722258 GACTGGGCAAATATTTT 5722274 >seq4836 Length=18949 Score = 122 bits (134), Expect = 3e-24 Identities = 67/67 (100%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1292 CTCTACGCAAGTCGAAGTTCATTACCGAACTCGATGACACCGACTGGGCAAATGTTTTCT 1351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13222 CTCTACGCAAGTCGAAGTTCATTACCGAACTCGATGACACCGACTGGGCAAATGTTTTCT 13163 Query 1352 TATACTT 1358 ||||||| Sbjct 13162 TATACTT 13156 >seq2514 Length=436980 Score = 114 bits (126), Expect = 4e-22 Identities = 68/71 (96%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 3214 TACATGATTGGGTACTGATTTATCGCCGTAAAACTCTTTAACATAATCCTCAAAAAGATT 3273 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 128302 TACATGATTGGGTACTGATTTGTCGCCGTAAAACTCTTTAACATAATCCTCAAAAAGAAT 128243 Query 3274 TTCATCACGTA 3284 |||||||| || Sbjct 128242 TTCATCACTTA 128232 Score = 93.3 bits (102), Expect = 1e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 3262 CTCAAAAAGATTTTCATCACGTATTGCTCCAAGTTCATCTATGGATGATACAACCATTG 3320 |||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 128401 CTCAAAAAGAATTTCATCACGTATTGCTCCAAGTTCATCTATGGTTCATACAACCATTG 128343 >seq6973 Length=3274684 Score = 102 bits (112), Expect = 3e-18 Identities = 56/56 (100%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 1288 AAGCCTCTACGCAAGTCGAAGTTCATTACCGAACTCGATGACACCGACTGGGCAAA 1343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 608983 AAGCCTCTACGCAAGTCGAAGTTCATTACCGAACTCGATGACACCGACTGGGCAAA 608928 >seq12098 Length=1003657 Score = 91.5 bits (100), Expect = 5e-15 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 1781 ATGATTTCTACTTACAGACTTTAGAGAATACATGTGTTTATCAAGCTGGTAATAT 1835 || ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 896437 ATAATTTCTATTTACAGACTTTAGAGAATACATGTGTTTATCAAGCTGGTAATAT 896491 >seq10877 Length=2432509 Score = 91.5 bits (100), Expect = 5e-15 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 4469 AATTGCTTCGTCGTCCAATTTATATACTTCAGTTTTGAAATCTTCTTCAGTAAAATACTG 4528 |||| |||| |||||||| ||| ||| |||||||||||| ||||| |||||||||||||| Sbjct 988901 AATTCCTTCATCGTCCAAATTAAATAGTTCAGTTTTGAATTCTTCATCAGTAAAATACTG 988842 Query 4529 TGATTTTGCA 4538 | |||||||| Sbjct 988841 TCATTTTGCA 988832 >seq2689 Length=8589770 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 1777 TTGAATGATTTCTACTTACAGACTTTAGAGAATACATGTGTTTATCAAGCTGGTAATA 1834 || ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1908224 TTTAATGATTTCTATTTACAGACTTTAGAGAATACATGTGTTTATCAAGCTGTTAATA 1908167 Score = 89.7 bits (98), Expect = 2e-14 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 1815 TGTTTATCAAGCTGGTAATATAGACCCTTTTGTTTTTTATCATAATATGGAA 1866 |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1908294 TGTTTATCAAGCTGTTAATATAGACCCTTTTGTTTTTTATCATAATATGGAA 1908243 >seq9858 Length=969078 Score = 86.0 bits (94), Expect = 2e-13 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 4484 CAATTTATATACTTCAGTTTTGAAATCTTCTTCAGTAAAATACTGTGATT 4533 |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 62104 CAATTTATATACTTCAGTTTTGAAGTCTTCTTCAGTAAAATACTGTGATT 62055 >seq13390 Length=1640224 Score = 80.6 bits (88), Expect = 9e-12 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 736 AAATTCCGTTATTACCTGTTGCAGATGATAACTGAGTTAAACGATGGAG 784 ||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 708579 AAATTCCGTTATTACCTGTTGCAGATGATAACTGAGTTAAAAGATTGAG 708531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16633791572655