Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_024690.1 Length=2121 Score E Sequences producing significant alignments: (Bits) Value seq17537 183 4e-43 seq11936 140 4e-30 >seq17537 Length=382 Score = 183 bits (202), Expect = 4e-43 Identities = 212/280 (76%), Gaps = 7/280 (3%) Strand=Plus/Plus Query 987 TGGGTCCTCGTTCATGCACATGATTGAGGGTTTGCCCCAGTAGATCGTTCGCTTCTTTCG 1046 |||||| || ||||| ||||||| | ||||| ||||| || ||| |||||| Sbjct 106 TGGGTCATCATTCATCAACATGATGCATGGTTTACCCCACCGGACTGTTTTCTTCTTCTT 165 Query 1047 GTACTTGTCCGTGATGACGAATTGTTTTTGTGCGCCTAGCCACCCCTTGTATGAGTGGAA 1106 ||| ||||| || | ||| |||| |||||||| |||||||||||||||||||||||||| Sbjct 166 GTATTTGTCAGTTACGACAAATTCCTTTTGTGCACCTAGCCACCCCTTGTATGAGTGGAA 225 Query 1107 GTATTCGAATCCTCCCTGGATGTCGTCGAAGACGGCGTATTGACAATCG--TCGGAGAAT 1164 | |||||||||||||||| | ||||||||| || ||||| | | | | || ||| Sbjct 226 GAATTCGAATCCTCCCTGAAGGTCGTCGAATACTGCGTA--GTCCGTGGACTCACTGAAG 283 Query 1165 TCGTCCATGTTGAATTGTAGGTTGAAGTACGCATGGTGTCCCA-ACGATCTGGCGTATAG 1223 ||| | ||||||||||| ||||||||| | || ||||| || | | |||| | || Sbjct 284 GAGTCGAGGTTGAATTGTAAGTTGAAGTAAGAGTGTCTTCCCAGACTA-CGGGCGAAAAG 342 Query 1224 CGTCTTTCCGGTTCTTGTTGG-TCCCCATAAAATGAGTGA 1262 |||||||| || ||||| || ||||||| |||||| || Sbjct 343 AGTCTTTCCTGTCCTTGTGGGACCCCCATAGAATGAGCGA 382 >seq11936 Length=696 Score = 140 bits (154), Expect = 4e-30 Identities = 302/442 (68%), Gaps = 16/442 (4%) Strand=Plus/Minus Query 1527 AGCAACCAATCTCTTGGAGCTTGTTGACGGACAGCCGACAGAAATGATTCTTTAGTGTCG 1586 |||| |||||| | ||||||||| || || || |||||||| ||||| |||| |||| Sbjct 635 AGCACCCAATCGCA-GGAGCTTGTGAGCGCACCGCTGACAGAAAAGATTCCTTAGAGTCG 577 Query 1587 CAGCTGATGATATCAGCCCACTTATTTGAATTATCCCCGTCA-CATGAGCGAGCATCTGC 1645 |||| || |||||| ||| | |||||| | || || ||| | | ||| Sbjct 576 CAGCCGACGATATCGTGCCATCTCGCTGAATTTCCTCCCCCAGCATTATT---CGTCTCA 520 Query 1646 T-GGGGGCTCG-CCGTGCTCAAGTCGGATGTCTCCATCCTTGCCGACATAATCGAAGACC 1703 | ||||||| || | ||| | | ||||| ||| ||||| |||||||| || | ||| Sbjct 519 TCGGGGGCTGTACCATACTCGAATACGATGTGTCCGTCCTTCCCGACATACTCATATACC 460 Query 1704 TTGTGTGGAGTTCGACGAATCGATTTAATATTGCCGTGAGCTCCAAAGTAGTCGAACG-- 1761 || | || || ||||||||||||||||| ||||||| ||| ||||| ||||| | Sbjct 459 TTTCGAGGCGTAACTCGAATCGATTTAATATTTCCGTGAGATCCGAAGTAATCGAAAGCG 400 Query 1762 -CAGTTGCCGAGTTGACAGTGACAATCTTGTCGAAGCCAAGATATATGTGGTAATGAATT 1820 | | ||| || |||| |||| | || |||| ||| |||| ||||||||||| Sbjct 399 TCGGGTGCTGA---GACAACGACAGGCGACTCAAAGCTAAGGTATACATGGTAATGAATG 343 Query 1821 CCTCCATCCGAATGGCGCTCTCGTCCGAGTCGACAGCATAAAGGATTTCCAAAATTCGCT 1880 |||||||| || ||||| ||| | ||| ||| |||||| |||||| | | Sbjct 342 CCTCCATCGCTGTGAGACTCTCTTCCAATTCGGAGGCACGTAGGATTCTCAAAATCCCGT 283 Query 1881 GTGACACGTTCAAGGAAAGGAGTTCC-TG--CGTCGAATTCATGTTGGAGGTGTTCGGGG 1937 ||| |||||||||| ||| || | ||||| | | |||| | ||||| | Sbjct 282 TGCACAAATTCAAGGAAATCTCCTCCATGGTCATCGAACTTGCGCTGGACATCTTCGGTG 223 Query 1938 ACTTGTGGAAACGTAATGATAA 1959 |||||| || |||| |||| Sbjct 222 GTTTGTGGGAATGTAAGAATAA 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6670819840692