Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq15138 136 2e-28 seq9884 91.5 8e-15 >seq15138 Length=312 Score = 136 bits (150), Expect = 2e-28 Identities = 185/251 (74%), Gaps = 13/251 (5%) Strand=Plus/Minus Query 7249 GGCACGTCGTACAGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCTGCAGA 7308 |||| ||||| ||||||||||||||||||| |||| ||| |||||||||||||||| Sbjct 312 GGCATGTCGTGCAGCGCCTCTTCCATCGCCGGATCCGACAGGCCGAACCATTGCTGCAAG 253 Query 7309 AAGTGGATGCGCAGCATCGTTTCGACTGGAAACGGCTTCCGACCCGTCGCCTTGAC---C 7365 |||| || ||||||||||| |||| | |||||| || ||||| |||| | | Sbjct 252 TAGTGAATTCGCAGCATCGTCTCGATCGAGAACGGCGGACGTCCCGT---CTTGGCACGC 196 Query 7366 GGCGCATGCGGCGCTATCAACGCCAAAAAACGCCTGCCACGGCACCA-CACGTTCCATCT 7424 || ||||||||| | | | || | | || || ||| ||||||| || ||||| ||| Sbjct 195 GGTGCATGCGGCTCCA-CGACCTCCACAAGTGCTGCCCAGGGCACCACCAGGTTCC-TCT 138 Query 7425 CATCCAGAAATACCTGCTTGCGCG--TGCGTCGGTTGCTCAGGTCCAGGCCAAGGTCGCT 7482 | |||||||| | ||||||||| | | ||| | ||||| |||||| ||| || Sbjct 137 CGTCCAGAAACTCGCGCTTGCGCGTCTTCTTCG--TCGACAGGTTCAGGCCCAGGCCGAG 80 Query 7483 TTGTTTCATGG 7493 ||| ||||||| Sbjct 79 TTGCTTCATGG 69 >seq9884 Length=287 Score = 91.5 bits (100), Expect = 8e-15 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 6552 CGCGCATCATCCACAGATTGCTCAGGGCAAACAGCGTGTGTAATTGCTGTGTGTTCTTTA 6611 ||||| |||||||||||| ||| ||||||||||| | ||| ||||||||| Sbjct 280 CGCGC--CATCCACAGATTCGACAGCGCAAACAGCGTCACGATCTGCGCTGTGTTCTTCG 223 Query 6612 TCAAGCCTCGATAGCGCACCCTCAAGTGCCCAAACTGGCGCTTGATGACTCGGAACGGAT 6671 ||| || |||||||| | | ||| | || |||||||| |||||||| || ||||| | Sbjct 222 CCAACCCGCGATAGCGAAGCTTCACGAATCCGAACTGGCGTTTGATGACACGAAACGGGT 163 Query 6672 GTTCCACGCGGGCACGAATGCGCGCCTTGACCCGCTCCA 6710 | || || |||||| |||| ||||| | | ||||| Sbjct 162 GCTCGACTTTGGCACGGATGCTGGCCTTCATCTTCTCCA 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27295512507760