Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_030296.1 Length=5071 Score E Sequences producing significant alignments: (Bits) Value seq4257 98.7 3e-17 >seq4257 Length=938703 Score = 98.7 bits (108), Expect = 3e-17 Identities = 176/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 1895 GATCTATATGACGTACTCGAAAAACGTATAGCTaaaaaaaaTACCTTTTTTGTTCTCTCC 1954 ||| |||| || | |||| ||||| ||| | ||| ||||| || ||| || | | Sbjct 861190 GATGTATACGATATTATCGATAAACGAATACCGAAAGTCAATACGTTATTTATTTTGGCA 861131 Query 1955 CCATCGAATGCTGGCAAAAATTTTTTCTTCGATTGCATTGTACATTTTTATTTGAATTTC 2014 | ||||||| |||||||||||||| || || | |||||||||| | |||||| Sbjct 861130 GAACCGAATGCCGGCAAAAATTTTTTTTTTGACGCCGTTGTACATTTCACCGTAAATTTC 861071 Query 2015 GGTCTGATCGGTAATTTTAATAAGTACCAAAATTTCCCTTTACAAGAGTGTGTTCACAAA 2074 || | || | |||| |||| ||| | | || || |||||||| || ||| | Sbjct 861070 GGAATTATGGCAAATTGGAATAGATACAATCAATTTCCATTACAAGATTGCGTTAATCGT 861011 Query 2075 CGTATTCTTCTGTGGAACGAACCACAAGCTGAGCCTAGTGCTTTTGAAACTCTGAAAACG 2134 |||||| | | |||||||||||| | |||| | |||| ||||| || ||| Sbjct 861010 CGTATTATATTATGGAACGAACCAAATTTTGAGGATGGTGCGGAAGAAACGCTAAAATTA 860951 Query 2135 TTACTCGGAGGCGATCA 2151 ||| ||||||| ||||| Sbjct 860950 TTATTCGGAGGTGATCA 860934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16114381272300