Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_014927.1 Length=1838 Score E Sequences producing significant alignments: (Bits) Value seq220 129 7e-27 seq34 91.5 2e-15 >seq220 Length=254280 Score = 129 bits (142), Expect = 7e-27 Identities = 180/250 (72%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 644 AAAACAGAAGTGTACTTCTTCTGGGGACCAACTGGAGCAGGAAAATCCAGAACTGCACGC 703 ||||| || || |||| | ||||||||| | ||| | || ||||| || || | Sbjct 10951 AAAACGGATGTCTACTATTACTGGGGACCTCCAGGATCTGGTAAATCACGACGAGCCCTA 10892 Query 704 GAACAAGCGCTCGCGACTG-----GATTACGGGTATACTACAAACCTAGAGGAGACTGGT 758 ||| |||| ||| || | || | | | ||||||||||| | |||||||||| Sbjct 10891 GAAGAAGCTACCGCTACAGCCCCCGACTCCA--TCTACTACAAACCACGCGGAGACTGGT 10834 Query 759 GGGATGGATACAACGGACATGAATGCGTCATCTTCGATGACTTCTACGGATGGATAAAAT 818 |||| |||||| | ||| ||||||||| |||| |||||||||||||||||||| | Sbjct 10833 GGGACGGATACCAACAACAAACTTGCGTCATCATCGACGACTTCTACGGATGGATAAAGT 10774 Query 819 ACGACGAAGTACTTAAGATATGCGATCGTTATCCTTATCGCGTACCAGTCAAAGGTGGAT 878 |||||||| | || || |||||||| || || || || || ||| | ||||| || | Sbjct 10773 ACGACGAACTCCTAAAAATATGCGACCGCTACCCCTACAAGGTTCCAATAAAAGGAGGCT 10714 Query 879 ACG-AGAATT 887 ||| |||||| Sbjct 10713 ACGAAGAATT 10704 >seq34 Length=1051065 Score = 91.5 bits (100), Expect = 2e-15 Identities = 134/191 (70%), Gaps = 9/191 (5%) Strand=Plus/Plus Query 738 ACAAACCTAGAGGAGACTGGTGGGATGGATACAACGGACATGAATGCGTCATCTTCGATG 797 |||||| ||| |||| |||||||| |||||| | ||| | ||||||||| |||| | Sbjct 260243 ACAAACTCAGAAGAGATTGGTGGGACGGATACGAACAACACAAGTGCGTCATCATCGACG 260302 Query 798 ACTTCTACGGATGGATAAAATACGACGAAGT---------ACTTAAGATATGCGATCGTT 848 |||||||||| || || |||||||||||| | ||| |||||| ||| || | Sbjct 260303 ACTTCTACGGCTGAATTAAATACGACGAACTAAAAAAAAAACTAAAGATAACCGACCGCT 260362 Query 849 ATCCTTATCGCGTACCAGTCAAAGGTGGATACGAGAATTTTATTGCGaaaaaaaTATGGT 908 | || || ||||| | ||||| || ||||| || | | || | | | || ||| Sbjct 260363 ACCCATACAAAGTACCCATAAAAGGAGGGTACGAAAAATCCAAAGCAACACATATTTGGA 260422 Query 909 TTACGTCAAAC 919 | || |||||| Sbjct 260423 TAACCTCAAAC 260433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5772397881184