Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_014928.1 Length=1751 Score E Sequences producing significant alignments: (Bits) Value seq220 203 4e-49 seq34 122 1e-24 >seq220 Length=254280 Score = 203 bits (224), Expect = 4e-49 Identities = 382/549 (70%), Gaps = 21/549 (4%) Strand=Plus/Minus Query 196 AAGAAGCATCTCGATAACAGCATCCATATTGAGAAGGCAAATGGGACAGACGAACAAAAC 255 ||||| | |||| || ||| ||||||||||| |||||||| || | |||||||||||| Sbjct 11226 AAGAA-CTTCTCTATCACACTATCCATATTGAAAAGGCAAACGGATCCGACGAACAAAAC 11168 Query 256 CAAAAATACTGTTCGAAATCAGGCATATTTTTTGAATCGGGTATTCCAAACAAACAAGGG 315 |||| ||||||| |||| ||| || |||||| ||| | || | || ||||| Sbjct 11167 CAAACATACTGTAAGAAAAGCAACATGTTCTTTGAAAAGGGCGTGCCTCAAAATCAAGGA 11108 Query 316 ACACGGAATGATCTTAAATCTGTGGTGGAATCAATC---AACAAAGAAGGTGCTACGCTG 372 | |||| || || || |||||||||| |||| | | ||| | || | Sbjct 11107 CGAAGGAACGACCTCCAAGCTGTGGTGGACACAATTTCTACCGGTGAAAG----ACACAT 11052 Query 373 GGAAA-TATTGCCACCGAACACCCT--GAAATATA-CATACGCTATTTCCGTGGCATCCA 428 ||| ||| ||| | |||| || || | || || | | || || |||| Sbjct 11051 CGAAGCTATCGCCTCGAAACATCCAACGACTTTTATCAAATACCATCGAGGTATCATCGC 10992 Query 429 ACAACTGCTGCAACTGGTACGCCCAATACGTCAACGCGAT--TTCAAGACTGAGGTTTTT 486 | | || | ||| | || || || | || | || | | ||| || || || | Sbjct 10991 ATACCT-CAGCATCACTAACCCC--ATCC--CACCCCGTTCATACAAAACGGATGTCTAC 10937 Query 487 TATTACTGGGGGCCGCCAGGATCTGGGAAATCTAGAAGAGCGCTTGAGGAAGCGAG-GCA 545 ||||||||||| || ||||||||||| ||||| || |||| || || ||||| | || Sbjct 10936 TATTACTGGGGACCTCCAGGATCTGGTAAATCACGACGAGCCCTAGAAGAAGCTACCGCT 10877 Query 546 ACTTGACGGAGAATCCATATACTACAAACCCCGAGGATTATGGTGGGATGGCTATGAACA 605 || | | || ||||| ||||||||||| || ||| |||||||| || || |||| Sbjct 10876 ACA-GCCCCCGACTCCATCTACTACAAACCACGCGGAGACTGGTGGGACGGATACCAACA 10818 Query 606 ACAGCGCAGCGTTATAATAGACGACTTCTATGGATGGATAAAGTACGACGAAATGCTGAA 665 ||| |||| || || ||||||||||| ||||||||||||||||||||| | || || Sbjct 10817 ACAAACTTGCGTCATCATCGACGACTTCTACGGATGGATAAAGTACGACGAACTCCTAAA 10758 Query 666 AATAATGGACCGCTACCCATACAAGGTACAAATAAAAGGAGGATTTCAAGAATTCACATC 725 |||| ||||||||||| |||||||| | |||||||||||| | ||||||||||| | Sbjct 10757 AATATGCGACCGCTACCCCTACAAGGTTCCAATAAAAGGAGGCTACGAAGAATTCACAAC 10698 Query 726 AGAAAAAAT 734 | ||||| Sbjct 10697 ACGTAAAAT 10689 >seq34 Length=1051065 Score = 122 bits (134), Expect = 1e-24 Identities = 193/278 (69%), Gaps = 9/278 (3%) Strand=Plus/Plus Query 569 ACAAACCCCGAGGATTATGGTGGGATGGCTATGAACAACAGCGCAGCGTTATAATAGACG 628 |||||| | || || |||||||| || || |||||||| |||| || || |||| Sbjct 260243 ACAAACTCAGAAGAGATTGGTGGGACGGATACGAACAACACAAGTGCGTCATCATCGACG 260302 Query 629 ACTTCTATGGATGGATAAAGTACGACGAAATG---------CTGAAAATAATGGACCGCT 679 ||||||| || || || || ||||||||| | || || |||| ||||||| Sbjct 260303 ACTTCTACGGCTGAATTAAATACGACGAACTAAAAAAAAAACTAAAGATAACCGACCGCT 260362 Query 680 ACCCATACAAGGTACAAATAAAAGGAGGATTTCAAGAATTCACATCAGAAAAAATTTTTA 739 |||||||||| |||| ||||||||||| | || ||| || | || | | |||| | Sbjct 260363 ACCCATACAAAGTACCCATAAAAGGAGGGTACGAAAAATCCAAAGCAACACATATTTGGA 260422 Query 740 TTACTTCAAATGTCGACGTTTGTGACTTATACAAATTCGTAGGTTACGAAACTGCCGCCT 799 | || ||||| |||||| | || ||||||||| | ||| ||| ||| | Sbjct 260423 TAACCTCAAACGTCGACACAATTTTATTGTACAAATTCAAAAATTATACTCCTGACGCAT 260482 Query 800 TTGACAGACGCATTACATTAAAAGAATACATGGATTAA 837 |||| | ||||||| | ||||||||| |||| | ||| Sbjct 260483 TTGAACGTCGCATTATAATAAAAGAATTCATGCAGTAA 260520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5494017273832