Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_014929.1 Length=1703 Score E Sequences producing significant alignments: (Bits) Value seq220 232 7e-58 seq34 100 3e-18 >seq220 Length=254280 Score = 232 bits (256), Expect = 7e-58 Identities = 308/426 (72%), Gaps = 14/426 (3%) Strand=Plus/Minus Query 406 ATCAAATACCACAGAGGAATCAACGAATATCTCAAACTAATACATCCTATTGAACCCCGC 465 ||||||||||| |||| |||| || ||| |||| | | | || || |||||| Sbjct 11017 ATCAAATACCATCGAGGTATCATCGCATACCTCAGCATCACTAACCCCATCCCACCCCGT 10958 Query 466 AAAGAAAAAACATGGGTCTACTACTACTGGGGACCACCAGGCACGGGAAAATCACGACGA 525 | | ||||| |||||||| ||||||||||| ||||| | || |||||||||||| Sbjct 10957 TCATACAAAACGGATGTCTACTATTACTGGGGACCTCCAGGATCTGGTAAATCACGACGA 10898 Query 526 GCTCTGGAAGAAGCATCCCAAATCAACAGCAATAGT----ATATACTACAAACCACGTGG 581 || || |||||||| || | ||||| | || |||||||||||||| || Sbjct 10897 GCCCTAGAAGAAGCTACCG----CTACAGCCCCCGACTCCATCTACTACAAACCACGCGG 10842 Query 582 ACTCTGGTGGGACGGTTATCATCAACAAGAAAATGTCATCATAGACGATTTCTACGGATG 641 | |||||||||||| || || |||||| |||||||| ||||| ||||||||||| Sbjct 10841 AGACTGGTGGGACGGATACCAACAACAAACTTGCGTCATCATCGACGACTTCTACGGATG 10782 Query 642 GATAAAGTACGACGAACTCCTCAAAATAACTGACCGCTACCCATATAAAGTACAAATCAA 701 ||||||||||||||||||||| |||||| ||||||||||| || || || | ||| || Sbjct 10781 GATAAAGTACGACGAACTCCTAAAAATATGCGACCGCTACCCCTACAAGGTTCCAATAAA 10722 Query 702 AGGAGGATTTGAGGAGTTCACATCA---AAACGCATTTGGTTTACAAGCAACGTAGACAC 758 |||||| | || || |||||| || ||| || ||| | ||||| ||| | ||||| Sbjct 10721 AGGAGGCTACGAAGAATTCACAACACGTAAA---ATATGGATAACAAGTAACATTGACAC 10665 Query 759 CGATAAATTATATCATTTTATTGATTATAATAATGCAGCGTTCGAAAGACGCATTACATG 818 || |||||||| | |||| | | || | || || ||||||| |||||| Sbjct 10664 AGACAAATTATACAAATTTAAAAACTTTATTCCAAACGCTTTTGAAAGACAAATTACAAA 10605 Query 819 TAAAAT 824 |||||| Sbjct 10604 TAAAAT 10599 >seq34 Length=1051065 Score = 100 bits (110), Expect = 3e-18 Identities = 164/238 (69%), Gaps = 9/238 (4%) Strand=Plus/Plus Query 586 TGGTGGGACGGTTATCATCAACAAGAAAATGTCATCATAGACGATTTCTACGGATGGATA 645 ||||||||||| || | ||||| | |||||||| ||||| |||||||| || || Sbjct 260260 TGGTGGGACGGATACGAACAACACAAGTGCGTCATCATCGACGACTTCTACGGCTGAATT 260319 Query 646 AAGTACGACGAACT---------CCTCAAAATAACTGACCGCTACCCATATAAAGTACAA 696 || ||||||||||| || || ||||| |||||||||||||| ||||||| Sbjct 260320 AAATACGACGAACTAAAAAAAAAACTAAAGATAACCGACCGCTACCCATACAAAGTACCC 260379 Query 697 ATCAAAGGAGGATTTGAGGAGTTCACATCAAAACGCATTTGGTTTACAAGCAACGTAGAC 756 || |||||||| | || | | || | ||| || |||||| | || ||||| ||| Sbjct 260380 ATAAAAGGAGGGTACGAAAAATCCAAAGCAACACATATTTGGATAACCTCAAACGTCGAC 260439 Query 757 ACCGATAAATTATATCATTTTATTGATTATAATAATGCAGCGTTCGAAAGACGCATTA 814 || | ||| || | || | |||||| | || || || ||| | ||||||| Sbjct 260440 ACAATTTTATTGTACAAATTCAAAAATTATACTCCTGACGCATTTGAACGTCGCATTA 260497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5340427973224