Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_014930.1 Length=1760 Score E Sequences producing significant alignments: (Bits) Value seq220 205 1e-49 seq34 159 4e-36 >seq220 Length=254280 Score = 205 bits (226), Expect = 1e-49 Identities = 499/731 (68%), Gaps = 39/731 (5%) Strand=Plus/Minus Query 131 AAACAGGGACGCCTCACCTACAGGGGTTTTGTAACCTACATAAACCCACACGCTTTAGTA 190 ||||||| | ||| || || || || ||||| ||| | | ||||| | | || | | Sbjct 11292 AAACAGGCATGCCACATCTGCAAGGCTTTTGCAACTTGGAAAAACCAATTTGTTTCAAGA 11233 Query 191 CCATCAAGAAGCATCTCGATAACTCAATCCATATTGAGAAGGCAAATGGATCCGACATTG 250 ||||| | | |||| || || | ||||||||||| |||||||| ||||||||| Sbjct 11232 AAATCAAAGAACTTCTCTATCACACTATCCATATTGAAAAGGCAAACGGATCCGACGAAC 11173 Query 251 ACAACCAAAAATACTGTA-GTAAGTCAGGCATCTTTTTTGAAACGGGACAGCCCTCTAAA 309 | ||||||| |||||||| | || || ||| || ||||||| ||| ||| || ||| Sbjct 11172 AAAACCAAACATACTGTAAGAAAAGCAA-CATGTTCTTTGAAAAGGGCGTGCC-TCAAAA 11115 Query 310 -CAAGGACAGAGGTCGGACCTT---GCTGTCGTTAGTAACAAAATCTTGGAAGGAAGTAC 365 ||||||| ||| ||||| ||||| || | |||| ||| ||| || Sbjct 11114 TCAAGGACGAAGGAACGACCTCCAAGCTGTGGTG-GACACAATTTCTACCGGTGAAAGAC 11056 Query 366 TACAATACGAGATATTGCCACCCAACATCCTGAAACGTACATCAGATACTTTCGCGGCAT 425 ||| | || ||| ||| | ||||||| || | |||| |||| ||| || || Sbjct 11055 -ACA-TCGAAGCTATCGCCTCGAAACATCCAACGACTTTTATCAAATACCATCGAGGTAT 10998 Query 426 --TCGAGAACTACAACGATTGGTCAACCCGATCTCTCCTCGAGACTTTCCCACACAA--- 480 ||| || || | || | ||||| ||| | || || ||| ||| || Sbjct 10997 CATCGCATACCTCAGC-ATCACT-AACCCCATCCCACCCCG-----TTCATACAAAACGG 10945 Query 481 --GTATATTACTACTACGGTCCGCCAGGAACAGGTAAATCCAGAACTGCTTTGGAAGAAG 538 || || || |||| || || |||||| | |||||||| || || | ||||||| Sbjct 10944 ATGTCTACTATTACTGGGGACCTCCAGGATCTGGTAAATCACGACGAGCCCTAGAAGAAG 10885 Query 539 CaaaaaaaaTTGATCC-GACTTCCATCTACTATAAACCACGAGGTCTGTGGGGGGACGGC 597 | | | | || |||| |||||||||| |||||||| || ||| ||||||| Sbjct 10884 CTACCGCTACAGCCCCCGACT-CCATCTACTACAAACCACGCGGAGACTGGTGGGACGG- 10827 Query 598 TATACAAACCAGAAA--TGTGTTATTATTGACGACTTCTACGGATGGATAAAATACGACG 655 |||| ||| | ||| || || || || ||||||||||||||||||||||| ||||||| Sbjct 10826 -ATACCAACAACAAACTTGCGTCATCATCGACGACTTCTACGGATGGATAAAGTACGACG 10768 Query 656 AACTACTGAAAATTTGCGACCGTTATCCTTACAAAGTACAAATAAAAGGGGGATTCGAAG 715 |||| || ||||| |||||||| || || ||||| || | ||||||||| || | ||||| Sbjct 10767 AACTCCTAAAAATATGCGACCGCTACCCCTACAAGGTTCCAATAAAAGGAGGCTACGAAG 10708 Query 716 AATTCAACAGCAC-ACACATCTGGATTACTTCAAACGTCGATACAGATTTATTGTATAAA 774 ||||| ||| ||| | || ||||| || ||| | || ||||| ||| || ||| Sbjct 10707 AATTC-ACAACACGTAAAATATGGATAACAAGTAACATTGACACAGACAAATTATACAAA 10649 Query 775 TTT--ACAGGATATT-GTAACGCTGCATTTGAACGTCGTATTACAATaaaaaaaTATTTT 831 ||| | | |||| |||||| |||||| | | ||||||| |||| |||| | Sbjct 10648 TTTAAAAACTTTATTCCAAACGCT---TTTGAAAGACAAATTACAAATAAAATATATATA 10592 Query 832 GCTTAAGACAG 842 || ||| |||| Sbjct 10591 GCCTAA-ACAG 10582 >seq34 Length=1051065 Score = 159 bits (176), Expect = 4e-36 Identities = 189/253 (75%), Gaps = 15/253 (6%) Strand=Plus/Plus Query 586 TGGGGGGACGGCTATACAAAC--CAGAAATGTGTTATTATTGACGACTTCTACGGATGGA 643 ||| ||||||| |||| ||| || || || || || || |||||||||||||| || | Sbjct 260260 TGGTGGGACGG--ATACGAACAACACAAGTGCGTCATCATCGACGACTTCTACGGCTGAA 260317 Query 644 TAAAATACGACGAACTA---------CTGAAAATTTGCGACCGTTATCCTTACAAAGTAC 694 | ||||||||||||||| || || || |||||| || || |||||||||| Sbjct 260318 TTAAATACGACGAACTAAAAAAAAAACTAAAGATAACCGACCGCTACCCATACAAAGTAC 260377 Query 695 AAATAAAAGGGGGATTCGAAGAATTCAACAGCA-CACACATCTGGATTACTTCAAACGTC 753 |||||||| || | |||| ||| ||| |||| |||| || ||||| || ||||||||| Sbjct 260378 CCATAAAAGGAGGGTACGAAAAATCCAA-AGCAACACATATTTGGATAACCTCAAACGTC 260436 Query 754 GATACAGATTTATTGTATAAATTTACAGGATATTGTAACGCTGCATTTGAACGTCGTATT 813 || ||| ||||||||| ||||| | | ||| | | |||||||||||||| ||| Sbjct 260437 GACACAATTTTATTGTACAAATTCAAAAATTATACTCCTGACGCATTTGAACGTCGCATT 260496 Query 814 ACAATaaaaaaaT 826 | ||||||| ||| Sbjct 260497 ATAATAAAAGAAT 260509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5522815267696