Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_020206.1 Length=1719 Score E Sequences producing significant alignments: (Bits) Value seq220 286 4e-74 seq34 138 1e-29 >seq220 Length=254280 Score = 286 bits (316), Expect = 4e-74 Identities = 486/697 (70%), Gaps = 18/697 (3%) Strand=Plus/Plus Query 875 ATATGTACTTTATTTGTAATACGACGCTCGAATGGAGCTGGATCGTAATTAGTAAATTTG 934 |||| || |||||||||||| | | || || | |||| | || |||||||| Sbjct 10593 ATATATATTTTATTTGTAATTTGTCTTTCAAAAGCGTTTGGAATAAAGTTTTTAAATTTG 10652 Query 935 TATAACATATCTGTGTCTACGTTGCTTGTAATCCATATTCTCCTACTTGTAAATTCCTCG 994 ||||| | |||||||| | ||| ||||| ||||||||| | | |||| ||||| ||| Sbjct 10653 TATAATTTGTCTGTGTCAATGTTACTTGTTATCCATATTTTACGTGTTGTGAATTCTTCG 10712 Query 995 TATCCCCCTTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCC 1054 || || ||||||| ||| || ||||| ||||| ||||||||||||||||| |||||||| Sbjct 10713 TAGCCTCCTTTTATTGGAACCTTGTAGGGGTAGCGGTCGCATATTTTTAGGAGTTCGTCG 10772 Query 1055 CATTTTATCCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCC 1114 | ||||||||||||||||||||||| || |||||| |||||| |||||||||||| Sbjct 10773 TACTTTATCCATCCGTAGAAGTCGTCGATGATGACGCAAGTTTGTTGTTGGTATCCGTCC 10832 Query 1115 CACCATTCTCCGCGTGGTTTGTAGTATAT---TCCTCCTTCTATGGACGTAGCCTCCATG 1171 ||||| |||||||||||||||||||| || | || | | ||||| || Sbjct 10833 CACCAGTCTCCGCGTGGTTTGTAGTAGATGGAGTCGGGGGCTGTAGCGGTAGCTTCTTCT 10892 Query 1172 AGCGAACGTCTGGATTTCCCTGTGCCGGTCGGTCCCCAATAGTAGTAAACGAAGGTTTTA 1231 || | |||| ||||| || | || | |||||||| || ||||| || ||||| Sbjct 10893 AGGGCTCGTCGTGATTTACCAGATCCTGGAGGTCCCCAGTAATAGTAGACATCCGTTTTG 10952 Query 1232 AACGTTCGCGGATTAATTGGGCATGTGGTTTTGAGGTACTCTTTAATTCCGCGATGGTAC 1291 | | || || || ||| ||| | ||||||| | | || || |||||||| Sbjct 10953 TATGAACGGGGTGGGATGGGGTTAGTGATGCTGAGGTATGCGATGATACCTCGATGGTAT 11012 Query 1292 CTGATATAACTGGTGGGAAAAGCCTCGGCGATAG-TGCGTATGTCCCTTTGCCCACTCTG 1350 ||||| || | || ||| | |||||||| | || |||| |||| || | Sbjct 11013 TTGATAAAAGTCGTTGGATGTTTCGAGGCGATAGCTTCG-ATGTGTCTTTCACCGGTAGA 11071 Query 1351 AATGGCGTCCACAAGGGCTGCCAAATCGTTATGGTGTCCCTTGTCCACTTGGAGTC---C 1407 ||| | |||||| | ||| | ||||| || ||||| | || ||| | | Sbjct 11072 AATTGTGTCCACCACAGCTTGGAGGTCGTTCCTTCGT-CCTTG---ATTTTGAGGCACGC 11127 Query 1408 CCGTTTCAAAGTA---GTCCCCAGATTTCGTACAATATTTTTGGTTGTCTGTGTCGGATC 1464 || |||||||| | || | |||| |||| ||| ||||||| | | |||||||| Sbjct 11128 CCTTTTCAAAGAACATGTTGC---TTTTCTTACAGTATGTTTGGTTTTGTTCGTCGGATC 11184 Query 1465 CATTTGCCTTTTCAAGATGGATTGCGTTATCGAGCTTGGCTTTAATAGTGTTGAAGCGCA 1524 | ||||||||||||| |||||| | || || ||| |||| || | ||||| | | Sbjct 11185 CGTTTGCCTTTTCAATATGGATAGTGTGATAGAGAAGTTCTTTGATTTTCTTGAAACAAA 11244 Query 1525 TCTGCTTTTTAAGGTTACAAAATCCTTGCAGATGTGG 1561 | | |||| | ||| ||||| |||||||||||||| Sbjct 11245 TTGGTTTTTCCAAGTTGCAAAAGCCTTGCAGATGTGG 11281 >seq34 Length=1051065 Score = 138 bits (152), Expect = 1e-29 Identities = 183/253 (72%), Gaps = 11/253 (4%) Strand=Plus/Minus Query 882 CTTTATTTGTAATACGACGCTCGAATGGAGCTGGATCGTAATTAGTAAATTTGTATAACA 941 |||| || |||| ||||| || |||| | ||| ||||| | |||||||| || | Sbjct 260506 CTTTTATTATAATGCGACGTTCAAATGCGTCAGGAGTATAATTTTTGAATTTGTACAATA 260447 Query 942 TATCTGTGTCTACGTTGCTTGTAATCCATAT-TCTCCTACTTGTAAATTCCTCGTATCCC 1000 | |||||| ||||| || ||||| || | | | ||| | ||| ||||| || Sbjct 260446 AAATTGTGTCGACGTTTGAGGTTATCCAAATATGTGTTGCTT-TGGATTTTTCGTACCCT 260388 Query 1001 CCTTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGT---------AGTTCG 1051 ||||||| ||||||||||||||||| |||||| ||| |||||| |||||| Sbjct 260387 CCTTTTATGGGTACTTTGTATGGGTAGCGGTCGGTTATCTTTAGTTTTTTTTTTAGTTCG 260328 Query 1052 TCCCATTTTATCCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCG 1111 || |||| || || |||||||||||||| || |||||| | ||||| | ||||||| Sbjct 260327 TCGTATTTAATTCAGCCGTAGAAGTCGTCGATGATGACGCACTTGTGTTGTTCGTATCCG 260268 Query 1112 TCCCACCATTCTC 1124 |||||||| |||| Sbjct 260267 TCCCACCAATCTC 260255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5391624406760