Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_021568.1 Length=1832 Score E Sequences producing significant alignments: (Bits) Value seq220 134 2e-28 seq34 77.0 4e-11 >seq220 Length=254280 Score = 134 bits (148), Expect = 2e-28 Identities = 124/157 (79%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 720 CTACTACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGACAACCTAATGTGGTCAT 779 ||||||||||||| | ||||| |||||||| |||||| |||| || || |||| Sbjct 10859 CTACTACAAACCACGCGGAGACTGGTGGGACGGATACCAACAACAAACTTGCGTCATCAT 10800 Query 780 CGACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGACCGATACCC 839 ||||||||| || |||||||| || || |||||||| || ||||| |||||||| ||||| Sbjct 10799 CGACGACTTCTACGGATGGATAAAGTACGACGAACTCCTAAAAATATGCGACCGCTACCC 10740 Query 840 CTACCGCGTCCCAGTCAAAGGAGGATACGAAAACTTC 876 |||| || ||| | |||||||| |||||| | ||| Sbjct 10739 CTACAAGGTTCCAATAAAAGGAGGCTACGAAGAATTC 10703 >seq34 Length=1051065 Score = 77.0 bits (84), Expect = 4e-11 Identities = 113/160 (71%), Gaps = 15/160 (9%) Strand=Plus/Plus Query 725 ACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGACAACCTAAT---GTGGTCATCG 781 |||||| ||| |||| |||||||| |||||| | ||||| || || |||||| Sbjct 260243 ACAAACTCAGAAGAGATTGGTGGGACGGATAC---GAACAACACAAGTGCGTCATCATCG 260299 Query 782 ACGACTTTTATGGATGGATTAAATATGACGAACT---------TCTCAAAATTTGCGACC 832 ||||||| || || || |||||||| |||||||| || || || ||||| Sbjct 260300 ACGACTTCTACGGCTGAATTAAATACGACGAACTAAAAAAAAAACTAAAGATAACCGACC 260359 Query 833 GATACCCCTACCGCGTCCCAGTCAAAGGAGGATACGAAAA 872 | ||||| ||| || || | |||||||| |||||||| Sbjct 260360 GCTACCCATACAAAGTACCCATAAAAGGAGGGTACGAAAA 260399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5753199218608