Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_021707.2 Length=1855 Score E Sequences producing significant alignments: (Bits) Value seq220 116 4e-23 >seq220 Length=254280 Score = 116 bits (128), Expect = 4e-23 Identities = 140/189 (74%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 778 CACCTACTACAAGCCGCGTGGAGAATGGTGGGATGGATACACCGGACAACCGTGCGTTGT 837 || ||||||||| || || ||||| |||||||| |||||| |||| | ||||| | Sbjct 10862 CATCTACTACAAACCACGCGGAGACTGGTGGGACGGATACCAACAACAAACTTGCGTCAT 10803 Query 838 TATCGATGACTTCTACGGATGGATCAAATACGATGAGCTTCTCAAGATCTGCGACAGATA 897 ||||| ||||||||||||||||| || ||||| || || || || || |||||| | || Sbjct 10802 CATCGACGACTTCTACGGATGGATAAAGTACGACGAACTCCTAAAAATATGCGACCGCTA 10743 Query 898 TCCTTACAGAGTCCCTGTCAAAGGAGGATATGAAAACTTCGTATC---TAAATATATATG 954 || |||| || || | |||||||| || ||| | ||| | | |||| ||||| Sbjct 10742 CCCCTACAAGGTTCCAATAAAAGGAGGCTACGAAGAATTCACAACACGTAAA---ATATG 10686 Query 955 GATCACAAG 963 ||| ||||| Sbjct 10685 GATAACAAG 10677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5826794091816