Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_023866.1 Length=1784 Score E Sequences producing significant alignments: (Bits) Value seq220 223 4e-55 seq34 95.1 1e-16 >seq220 Length=254280 Score = 223 bits (246), Expect = 4e-55 Identities = 453/662 (68%), Gaps = 17/662 (3%) Strand=Plus/Plus Query 990 TAAATTTGTAAAGTTGATCAGTATCAACGTTACTTGTAATCCATATGCGTCTGCTTGTAA 1049 |||||||||| | || || || |||| ||||||||| |||||||| | |||| | Sbjct 10645 TAAATTTGTATAATTTGTCTGTGTCAATGTTACTTGTTATCCATATTTTACGTGTTGTGA 10704 Query 1050 ATTCTTCGAACCCTCCTTTGACTTGTACCTTGTAGGGGTATCGGTCCATTATTTTCAGCA 1109 |||||||| | |||||||| | | | |||||||||||||| ||||| |||||| || | Sbjct 10705 ATTCTTCGTAGCCTCCTTTTATTGGAACCTTGTAGGGGTAGCGGTCGCATATTTTTAGGA 10764 Query 1110 TTTCGTCATATTTTATCCATCCATAGAAGTCGTCTATGATGACGTTGTCCTGTTGATGGT 1169 |||||| || ||||||||||| ||||||||||| ||||||||| ||||| |||| Sbjct 10765 GTTCGTCGTACTTTATCCATCCGTAGAAGTCGTCGATGATGACGCAAGTTTGTTGTTGGT 10824 Query 1170 AGCCGTCCCACCAGAGCCCTCTAGGTTTGTAGTAAAT---TTCGCCTTCTATTTCCATAG 1226 | |||||||||||| || | ||||||||||| || ||| || | | ||| Sbjct 10825 ATCCGTCCCACCAGTCTCCGCGTGGTTTGTAGTAGATGGAGTCGGGGGCTGTAGCGGTAG 10884 Query 1227 CCTCTTTGAGAGCGCGGCTAGATTTGCCCGATCCGGTTGGTCCCCAGTAGTAGTATACCC 1286 | |||| || || || | ||||| || ||||| | ||||||||||| ||||| || Sbjct 10885 CTTCTTCTAGGGCTCGTCGTGATTTACCAGATCCTGGAGGTCCCCAGTAATAGTAGACAT 10944 Query 1287 ATGTTTTAAACATTCTTGGTTGCACTGGCTTCGT-AAGTTGTAGGTATTCGCGGATTCCA 1345 ||||| | | ||| | | || || || | | || |||||| || ||| || Sbjct 10945 CCGTTTTGTATGAACGGGGTGGGATGGGGTTAGTGATGCTG-AGGTATGCGATGATACCT 11003 Query 1346 CGATGGTATTTGATAAAAGCGATGGGATGATCCTTCGCAATA---TCACTGAGTCTGATT 1402 ||||||||||||||||||| | ||||| | | || ||| || || ||| || Sbjct 11004 CGATGGTATTTGATAAAAGTCGTTGGATGTTTCGAGGCGATAGCTTCGATGTGTC---TT 11060 Query 1403 TGCCCATTCTGTATACCTTCGACAAGGGAGACCAGGTCTGTACGTTTCCCTTGTCCGACA 1462 | || | || || || | | ||||| | | | ||||| | Sbjct 11061 TCACCGGTAGAAATTGTGTCCACCACAGCTTGGAGGTCGTTCCTTCGTCCTTGATTTTGA 11120 Query 1463 GGCGTTCCCTTTTCAAAGTACGTGCCAGATTTTC-GACAGTATATTTGATTTTGTTCGTC 1521 ||| |||||||||||| || || | ||||| ||||||| |||| ||||||||||| Sbjct 11121 GGCACGCCCTTTTCAAAGAACATG-TTGCTTTTCTTACAGTATGTTTGGTTTTGTTCGTC 11179 Query 1522 TGTCCCGTTTGCCTTTTCAAGATG--TATTCTGGTAGCGAGTTTACTCTTAATGTTGTTA 1579 | |||||||||||||||| ||| || | || ||| || || || || || || || Sbjct 11180 GGATCCGTTTGCCTTTTCAATATGGATAGTGTGATAGAGAAGTT-CT-TTGATTTTCTTG 11237 Query 1580 AATCGCATACCTTTGGTAAGATTGCAAAATCCTGGTAGATGTATTGTGCCTGTGGTAGGT 1639 || | || ||| | |||||||| ||| | |||||| ||||||| |||| Sbjct 11238 AAACAAATTGGTTTTTCCAAGTTGCAAAAGCCTTGCAGATGTGGCATGCCTGTTTGAGGT 11297 Query 1640 GC 1641 || Sbjct 11298 GC 11299 >seq34 Length=1051065 Score = 95.1 bits (104), Expect = 1e-16 Identities = 176/256 (69%), Gaps = 13/256 (5%) Strand=Plus/Minus Query 938 ATGTATACTTTATTTGTAATTCTGCGATCGAATGCGTCGCTTACATAACCAATAAATTTG 997 ||| || |||| || |||| | || || |||||||| |||| | |||||| Sbjct 260513 ATGAATTCTTTTATTATAATGCGACGTTCAAATGCGTCAGGAGTATAATTTTTGAATTTG 260454 Query 998 TAAAGTTGATCAGTATCAACGTTACTTGTAATCCA--TATGCGTCTGCTTGTAAATTCTT 1055 || | | | || || ||||| || ||||| |||| || ||||| | ||| || Sbjct 260453 TACAATAAAATTGTGTCGACGTTTGAGGTTATCCAAATATGTGT-TGCTT-TGGATTTTT 260396 Query 1056 CGAACCCTCCTTTGACTTGTACCTTGTAGGGGTATCGGTCCATTATTTTCAGCATTT--- 1112 || |||||||||| | |||| ||||| ||||| ||||| |||| || || ||| Sbjct 260395 CGTACCCTCCTTTTATGGGTACTTTGTATGGGTAGCGGTCGGTTATCTTTAGTTTTTTTT 260336 Query 1113 ------CGTCATATTTTATCCATCCATAGAAGTCGTCTATGATGACGTTGTCCTGTTGAT 1166 |||| ||||| || || || ||||||||||| ||||||||| | ||||| | Sbjct 260335 TTAGTTCGTCGTATTTAATTCAGCCGTAGAAGTCGTCGATGATGACGCACTTGTGTTGTT 260276 Query 1167 GGTAGCCGTCCCACCA 1182 ||| ||||||||||| Sbjct 260275 CGTATCCGTCCCACCA 260260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5599609918000