Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_023867.1 Length=1740 Score E Sequences producing significant alignments: (Bits) Value seq220 284 1e-73 seq34 134 2e-28 >seq220 Length=254280 Score = 284 bits (314), Expect = 1e-73 Identities = 456/646 (71%), Gaps = 18/646 (3%) Strand=Plus/Plus Query 770 ATATCTTTTTATTGTAATTCTGCGTTCAAATGCTGCTGTATTGTATCCTTCAAATTTATA 829 |||| |||| |||||||| | |||||| || || | | | || |||||| || Sbjct 10595 ATATATTTTATTTGTAATTTGTCTTTCAAAAGCGTTTGGAATAAAGTTTTTAAATTTGTA 10654 Query 830 TAAAAAATCTGTATCGACATTTGTTGTTATCCATAATTTCTCTGTTGTAAATTCCTCGAA 889 ||| ||||| || | || |||||||||||| ||| |||||| ||||| ||| | Sbjct 10655 TAATTTGTCTGTGTCAATGTTACTTGTTATCCATATTTTACGTGTTGTGAATTCTTCGTA 10714 Query 890 TCCTCCTTTCACTTGAACTTGGTATGGGTAGCGGTC-CATAATTTTGAGCATTTCGTCAT 948 |||||||| | | |||| | ||| ||||||||||| ||| ||||| || | |||||| | Sbjct 10715 GCCTCCTTTTATTGGAACCTTGTAGGGGTAGCGGTCGCAT-ATTTTTAGGAGTTCGTCGT 10773 Query 949 ATTTTATCCATCCGTAGAAGTCATCGATTATTACGCATTTTTGTTGTTGGTATCCGTCCC 1008 | |||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||| Sbjct 10774 ACTTTATCCATCCGTAGAAGTCGTCGATGATGACGCAAGTTTGTTGTTGGTATCCGTCCC 10833 Query 1009 ACCATAGTCCTCTGGGCTTGTAATATATTGAGTCTGGAGCGTGT-GCCATGGCTTCTTCC 1067 |||| ||| | || ||||| || || ||||| || || ||| || | |||||||| Sbjct 10834 ACCAGTCTCCGCGTGGTTTGTAGTAGATGGAGTCGGGGGC-TGTAGCGGTAGCTTCTTCT 10892 Query 1068 AATGCTGTTTTGGATTTTCCTGTTCCGGGAAGTCCGAGAAAATAGTAGACCTCAGTTTTG 1127 | ||| | ||||| || | ||| ||| |||| |||||||||| || |||||| Sbjct 10893 AGGGCTCGTCGTGATTTACCAGATCCTGGAGGTCCCCAGTAATAGTAGACATCCGTTTTG 10952 Query 1128 AAAAATCTGGGTTGTATAGGAACAACGCTTCTGATATATTCTTTGATTCCACGAAAGTAT 1187 | | | |||| | || || | | | |||| ||| | |||| || ||| |||| Sbjct 10953 TATGAACGGGGTGGGATGGGGTTAGTGATGCTGAGGTATGCGATGATACCTCGATGGTAT 11012 Query 1188 TTGATAAAAGTGGTTGGATGTTCTCTCGCAATATCTTTGATATTGGTTGTTCCACTCTGT 1247 ||||||||||| |||||||||| || ||| ||| || || | || ||| | || Sbjct 11013 TTGATAAAAGTCGTTGGATGTTTCGAGGCGATAGCTTCGA---TGTGTCTTTCAC-CGGT 11068 Query 1248 ----ATGGTATCCACGACGGATTGTAAATCATTTCTTTTCCCCTGCGATTGAGGATTACC 1303 || || ||||| || | ||| | || || ||| || || |||||| || Sbjct 11069 AGAAATTGTGTCCACCACAGCTTGGAGGTCGTTCCTTCGTCCTTGATTTTGAGGCACGCC 11128 Query 1304 CGTCTCA---AATATCTCGCCTGCCTTAGAACAGTACCTTTTGTTATCTTCGTCGGATCC 1360 | | ||| || || | || | ||| |||||| ||| ||| | |||||||||||| Sbjct 11129 CTTTTCAAAGAACATGTTGCTTTTCTT---ACAGTATGTTTGGTTTTGTTCGTCGGATCC 11185 Query 1361 ATTTGCCTTCTCAATATGGATTCCGTGATGCAAACGCTTTTTGATT 1406 |||||||| ||||||||||| ||||| | | | | ||||||| Sbjct 11186 GTTTGCCTTTTCAATATGGATAGTGTGATAGAGAAGTTCTTTGATT 11231 >seq34 Length=1051065 Score = 134 bits (148), Expect = 2e-28 Identities = 189/264 (72%), Gaps = 11/264 (4%) Strand=Plus/Minus Query 776 TTTTATTGTAATTCTGCGTTCAAATGCTGCTGTATTGTATCCTTCAAATTTATATAAAAA 835 ||||||| |||| | ||||||||||| | | | | || || ||||| || || || Sbjct 260505 TTTTATTATAATGCGACGTTCAAATGCGTCAGGAGTATAATTTTTGAATTTGTACAATAA 260446 Query 836 ATCTGTATCGACATTTGTTGTTATCCATA-ATTTCTCTGTTGTAAATTCCTCGAATCCTC 894 | ||| ||||| |||| |||||||| | || | | || | | ||| ||| | |||| Sbjct 260445 AATTGTGTCGACGTTTGAGGTTATCCAAATATGTGT-TGCTTTGGATTTTTCGTACCCTC 260387 Query 895 CTTTCACTTGAACTTGGTATGGGTAGCGGTCCATAATTTTGAGCATTT---------CGT 945 |||| | | |||| ||||||||||||||| | || || || ||| ||| Sbjct 260386 CTTTTATGGGTACTTTGTATGGGTAGCGGTCGGTTATCTTTAGTTTTTTTTTTAGTTCGT 260327 Query 946 CATATTTTATCCATCCGTAGAAGTCATCGATTATTACGCATTTTTGTTGTTGGTATCCGT 1005 | ||||| || || ||||||||||| ||||| || ||||| || ||||||| |||||||| Sbjct 260326 CGTATTTAATTCAGCCGTAGAAGTCGTCGATGATGACGCACTTGTGTTGTTCGTATCCGT 260267 Query 1006 CCCACCATAGTCCTCTGGGCTTGT 1029 ||||||| || |||| | |||| Sbjct 260266 CCCACCAATCTCTTCTGAGTTTGT 260243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5458819725776