Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_023869.1 Length=1896 Score E Sequences producing significant alignments: (Bits) Value seq220 275 7e-71 seq34 168 8e-39 >seq220 Length=254280 Score = 275 bits (304), Expect = 7e-71 Identities = 483/691 (70%), Gaps = 17/691 (2%) Strand=Plus/Plus Query 916 TTTTATTTC-AAGTCGTCTTTCTAAGGCGGCTACATTGTAATTTTCAAATTTATATAATA 974 |||||||| || | ||||||| || ||| | | | | |||| |||||| |||||| Sbjct 10600 TTTTATTTGTAATTTGTCTTTCAAAAGCGTTTGGAATAAAGTTTTTAAATTTGTATAATT 10659 Query 975 AAGGTGTGTCGACATTTGATGTAATCCATATGTGTTTGC---TTGTAAATTCTTGAAAGC 1031 |||||| | || ||| |||||||| ||| | |||| ||||||| ||| Sbjct 10660 TGTCTGTGTCAATGTTACTTGTTATCCATAT---TTTACGTGTTGTGAATTCTTCGTAGC 10716 Query 1032 CTCCTTTGATCGGTACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATT 1091 ||||||| || || || ||||||||||| | ||| || ||||| || || |||||||| | Sbjct 10717 CTCCTTTTATTGGAACCTTGTAGGGGTAGCGGTCGCATATTTTTAGGAGTTCGTCGTACT 10776 Query 1092 TGATCCATCCGTAGAAGTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCACC 1151 | |||||||||||||||||||| || || || | |||||||| |||||||||||||||| Sbjct 10777 TTATCCATCCGTAGAAGTCGTCGATGATGACGCAAGTTTGTTGTTGGTATCCGTCCCACC 10836 Query 1152 ATTCTCCTCTTGGTTTGTAGTATATGCTGTCGGGGTCGATGGCCTGTGCTTCTGCGAGGG 1211 | ||||| | |||||||||||| ||| ||||||| | | || |||||| | |||| Sbjct 10837 AGTCTCCGCGTGGTTTGTAGTAGATGGAGTCGGGGGCTGTAGCGGTAGCTTCTTCTAGGG 10896 Query 1212 CCCGGCGGCTTTTACCAGATCCTGGGGGACCGTAGAAAAATACCACTCTTGTCTTAAAAT 1271 | || || ||||||||||||||| || || || || | || || || | Sbjct 10897 CTCGTCGTGATTTACCAGATCCTGGAGGTCCCCAGTAATAGTAGACATCCGTTTTGTATG 10956 Query 1272 ATCTCGGGGGTATTGGGTTGACGAGTTCCAAGTAACTTCG--TATACCGCGTCCGTATCT 1329 | | || || || ||||| || | ||| | || ||||| || |||| | Sbjct 10957 AACGGGGTGGGATGGGGTTAGTGATGCTGAGGTA--TGCGATGATACCTCGATGGTATTT 11014 Query 1330 GAT-ATAGCAGTTAGGATGTTTTTCTGCAATCCGTCGGATGTCTCTTTCGCCGGTTGATA 1388 ||| | || ||| |||||||| || || | ||||| |||||| ||||| || | Sbjct 11015 GATAAAAGTCGTT-GGATGTTTCGAGGCGATAGCTTCGATGTGTCTTTCACCGGTAGAAA 11073 Query 1389 TCGTTGCCACGACTGCGTCCAAATCACTGCGTCGTCCTTG-TTGACATGGACTGCCCGTT 1447 | || |||| || || | | || | | ||||||||| || | | || |||| || Sbjct 11074 TTGTGTCCACCACAGCTTGGAGGTCGTTCCTTCGTCCTTGATTTTGAGGCAC-GCCCTTT 11132 Query 1448 TCAAAAAATTCGCCGCTTTTGCTACAGTAAGTCTTGTTGTCTTCGTCGGATCCGTTTGCC 1507 ||||| || | |||||| ||||||| || | ||| | ||||||||||||||||||| Sbjct 11133 TCAAAGAACATGTTGCTTTTCTTACAGTATGTTTGGTTTTGTTCGTCGGATCCGTTTGCC 11192 Query 1508 TTTTCAATATGAGCTGTGTCACACAACGATTCTTTAATTTT-TCGAAAGCGCATTGGCTT 1566 ||||||||||| |||| | | | |||||| ||||| | |||| | ||||| || Sbjct 11193 TTTTCAATATGGATAGTGTGATAGAGAAGTTCTTTGATTTTCTTGAAA-CAAATTGGTTT 11251 Query 1567 GGATAGGTTGGCAAATCCTTGTAGGTGAGGC 1597 | |||| ||| ||||| || || ||| Sbjct 11252 TTCCAAGTTGCAAAAGCCTTGCAGATGTGGC 11282 >seq34 Length=1051065 Score = 168 bits (186), Expect = 8e-39 Identities = 209/283 (74%), Gaps = 15/283 (5%) Strand=Plus/Minus Query 899 TGTTACTCAATTAATTCTTTTATTTCAAGTCGTCTTTCTAAGGCGGCTACATTGTAATTT 958 ||||||| || |||||||||||| || || | ||| || ||| | | | |||||| Sbjct 260522 TGTTACTGCATGAATTCTTTTATTATAATGCGACGTTCAAATGCGTCAGGAGTATAATTT 260463 Query 959 TCAAATTTATATAATAAAGGTGTGTCGACATTTGATGTAATCCATATGTGT-TTGCTTGT 1017 | ||||| || |||||| ||||||||| ||||| || ||||| || ||| |||||| | Sbjct 260462 TTGAATTTGTACAATAAAATTGTGTCGACGTTTGAGGTTATCCAAATATGTGTTGCTT-T 260404 Query 1018 AAATTCTTGAAAGCCTCCTTTGATCGGTACTTTGTAGGGGTATCTGTCACAAATTTTGAG 1077 ||| || | |||||||| || ||||||||||| ||||| | ||| || || || Sbjct 260403 GGATTTTTCGTACCCTCCTTTTATGGGTACTTTGTATGGGTAGCGGTCGGTTATCTTTAG 260344 Query 1078 ---------TAGGTCGTCGTATTTGATCCATCCGTAGAAGTCGTCTATAATTA--CACTT 1126 ||| ||||||||||| || || |||||||||||||| || || | ||||| Sbjct 260343 TTTTTTTTTTAGTTCGTCGTATTTAATTCAGCCGTAGAAGTCGTCGATGATGACGCACTT 260284 Query 1127 GTTTGTTGGTGGTATCCGTCCCACCATTCTCCTCTTGGTTTGT 1169 | ||||| | ||||||||||||||| |||| ||| |||||| Sbjct 260283 G--TGTTGTTCGTATCCGTCCCACCAATCTCTTCTGAGTTTGT 260243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5957984952752