Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_023874.1 Length=1790 Score E Sequences producing significant alignments: (Bits) Value seq220 165 9e-38 seq34 123 3e-25 >seq220 Length=254280 Score = 165 bits (182), Expect = 9e-38 Identities = 401/592 (68%), Gaps = 19/592 (3%) Strand=Plus/Minus Query 301 ACATCTCCAAGGTTTCTGCTCGTTGGCTAAACCGAAAAGATTCAAATGGATTAAGGAACA 360 |||||| ||||| || ||| |||| ||||| | | ||||| || || |||| Sbjct 11279 ACATCTGCAAGGCTTTTGCAACTTGGAAAAACCAATTTGTTTCAAGAAAATCAAAGAACT 11220 Query 361 ACTGTCTAACCGTATCCATATTGAGAAGGCAATGGGATCCGACAAGGAAAACCAACAATA 420 || | | || |||||||||||| ||||||| ||||||||| | |||||||| ||| Sbjct 11219 TCTCTATCACACTATCCATATTGAAAAGGCAAACGGATCCGACGAACAAAACCAAACATA 11160 Query 421 CTGTA-GTAAATCAGGCGAGTTCTTTGAGAAGGGGAGTCCTTCTGAAGGATCCGGACAAC 479 ||||| | ||| || | ||||||||| ||||| || | || || | |||| | Sbjct 11159 CTGTAAGAAAAGCAA-CATGTTCTTTGAAAAGGGC-GTGCCTCAAAATCAA--GGACGAA 11104 Query 480 GGACGGACATTCAGTCCCTTTTGGAAACTATACAAGGAGGTGAGCATGACAT-TAGACGG 538 ||| ||| | || | | |||| || || ||||| | |||| | || | Sbjct 11103 GGAACGACCTCCAAGCTGTGGTGGACACAATTTCTACCGGTGA--AAGACACATCGAAGC 11046 Query 539 -ATTGCAGAAAAACATCCCGCATGCTATATCCGATACTATAGAGGTATACGAAGC-TACC 596 || || |||||||| | | |||| |||| || ||||||| | || |||| Sbjct 11045 TATCGCCTCGAAACATCCAACGACTTTTATCAAATACCATCGAGGTAT-CATCGCATACC 10987 Query 597 TAA--ATCTTGTAGCACCTGTTAGTCCCAGGAACTTTAAAACAGAAGTGCGGTATTATTG 654 | | ||| | | | | | ||| | | ||||| || || ||||| || Sbjct 10986 TCAGCATCACTAACCCCATCCCA--CCCCGTTCATACAAAACGGATGTCTACTATTACTG 10929 Query 655 GGGACCTCCGGGATCCGGGAAATCACGTAGAAGTCTGGAAGAATCATCTGGACTACTTGA 714 ||||||||| ||||| || |||||||| || || |||||| | | | |||| Sbjct 10928 GGGACCTCCAGGATCTGGTAAATCACGACGAGCCCTAGAAGAAGCTACCG--CTACAGCC 10871 Query 715 C--GGCACGGTCTATTATAAACCCAGAGGAGAATGGTGGGACGGCTACATGCAGCAAACG 772 | | | | |||| || ||||| | ||||| ||||||||||| ||| || ||||| Sbjct 10870 CCCGACTCCATCTACTACAAACCACGCGGAGACTGGTGGGACGGATACCAACAACAAACT 10811 Query 773 TCTGTTATTATAGATGACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAATATGT 832 | || || || || |||||||| || |||||||| ||||| ||||| || |||||||| Sbjct 10810 TGCGTCATCATCGACGACTTCTACGGATGGATAAAGTACGACGAACTCCTAAAAATATGC 10751 Query 833 GACAGATACCCACACAAGGTTCCAATAAAAGGAGGATTCGAAGAGTTTACAA 884 ||| | ||||| |||||||||||||||||||||| | |||||| || |||| Sbjct 10750 GACCGCTACCCCTACAAGGTTCCAATAAAAGGAGGCTACGAAGAATTCACAA 10699 >seq34 Length=1051065 Score = 123 bits (136), Expect = 3e-25 Identities = 187/265 (71%), Gaps = 11/265 (4%) Strand=Plus/Plus Query 731 AAACCCAGAGGAGAATGGTGGGACGGCTACATGCAGCAAACGTCTGTTATTATAGATGAC 790 |||| |||| |||| ||||||||||| ||| || || | || || || || || ||| Sbjct 260245 AAACTCAGAAGAGATTGGTGGGACGGATACGAACAACACAAGTGCGTCATCATCGACGAC 260304 Query 791 TTCTATGGCTGGATAAAATACGATGAACT---------GCTGAAAATATGTGACAGATAC 841 ||||| ||||| || |||||||| ||||| || || ||| ||| | ||| Sbjct 260305 TTCTACGGCTGAATTAAATACGACGAACTAAAAAAAAAACTAAAGATAACCGACCGCTAC 260364 Query 842 CCACACAAGGTTCCAATAAAAGGAGGATTCGAAGAGTTTACAAGCAA-ATATATTTTTAT 900 ||| |||| || || ||||||||||| | |||| | | | |||||| | |||||| || Sbjct 260365 CCATACAAAGTACCCATAAAAGGAGGGTACGAAAAATCCA-AAGCAACACATATTTGGAT 260423 Query 901 TACTTCAAATGTTGATGTATGTGACTTGTACAAATTCAATGGTTATACTACGGCTGCTAT 960 || ||||| || || | | |||||||||||||| ||||||| | | || | Sbjct 260424 AACCTCAAACGTCGACACAATTTTATTGTACAAATTCAAAAATTATACTCCTGACGCATT 260483 Query 961 TGACAGACGTATTACAATAAAAGAA 985 ||| | || |||| |||||||||| Sbjct 260484 TGAACGTCGCATTATAATAAAAGAA 260508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5618808580576