Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_023886.1 Length=1741 Score E Sequences producing significant alignments: (Bits) Value seq220 293 3e-76 seq34 122 1e-24 >seq220 Length=254280 Score = 293 bits (324), Expect = 3e-76 Identities = 491/694 (71%), Gaps = 22/694 (3%) Strand=Plus/Minus Query 315 CCTCATATACAAGGGTTCTGTAATTTATCGAAACCCATGCGATTTAACAACATCAAGAAG 374 || ||| | ||||| || || || || ||||| || | || || || ||||| | Sbjct 11281 CCACATCTGCAAGGCTTTTGCAACTTGGAAAAACCAATTTGTTTCAAGAAAATCAAAGAA 11222 Query 375 CATCTGCATAACTCAATCCATATTGAGAAGGCAAATGGATCCGACGAACAGAACAAAATT 434 | ||| || || | ||||||||||| |||||||| |||||||||||||| ||| ||| Sbjct 11221 CTTCTCTATCACACTATCCATATTGAAAAGGCAAACGGATCCGACGAACAAAACCAAACA 11162 Query 435 TACTGTTC-AAAATCAGGCGAGTTTTTTGAAAAGGGTCATCCTGACAAACAGGG--GAAG 491 |||||| |||| || | ||| ||||||||||| ||| | || || || |||| Sbjct 11161 TACTGTAAGAAAAGCAA-CATGTTCTTTGAAAAGGGCGTGCCTCAAAATCAAGGACGAAG 11103 Query 492 CGAAATGATTTGGACGCCGTCGTTCTTACAATACAGAATGG-GACGAACAC-TCTATCCA 549 || || | | || || || ||||| | || || |||| || | | Sbjct 11102 G--AACGACCTCCAAGCTGTGGTGGACACAATTTCTACCGGTGAAAGACACATCGAAGCT 11045 Query 550 A-CGTGGCTAAACTGCACCCAACTAGCTTTATCAAATACCATAAGGGAATCAAAGAATAC 608 | || | |||| | ||||| | ||||||||||||||| || |||| | |||| Sbjct 11044 ATCGCCTCGAAAC---ATCCAACGACTTTTATCAAATACCATCGAGGTATCATCGCATAC 10988 Query 609 ATCAACCATGTC-AACCCTATTCGCCCCCGACACTACAAATCTGAGGTCTACTATTATTG 667 ||| | || | ||||| || | ||||| |||||| | || ||||||||||| || Sbjct 10987 CTCAGC-ATCACTAACCCCATCCCACCCCGTTCATACAAAACGGATGTCTACTATTACTG 10929 Query 668 GGGTCCACCAGGAACCGGAAAATCAAAAACCGCTCTGGAAAAAGCAACCGCCTACAATAC 727 ||| || |||||| | || |||||| | || || ||| |||| ||||| |||| | Sbjct 10928 GGGACCTCCAGGATCTGGTAAATCACGACGAGCCCTAGAAGAAGCTACCGC-TACAGCCC 10870 Query 728 C-GACTCCATCTATTATAAACCGCGTGGTCTATGGTGGGATGGTTATCAACAGCAGACTA 786 | ||||||||||| || ||||| || || |||||||| || || ||||| || ||| Sbjct 10869 CCGACTCCATCTACTACAAACCACGCGGAGACTGGTGGGACGGATACCAACAACAAACTT 10810 Query 787 GCGTCATCATCGACGACTTCTATGGATGGATAAAATACGACGAACTTCTTAAAATATGTG 846 |||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||| | Sbjct 10809 GCGTCATCATCGACGACTTCTACGGATGGATAAAGTACGACGAACTCCTAAAAATATGCG 10750 Query 847 ACCGATATCCATACAAGGTTCAAATAAAAGGAGGCTTTGAAGAATTCACCA---GTAAAT 903 |||| || || |||||||||| |||||||||||||| ||||||||||| | ||||| Sbjct 10749 ACCGCTACCCCTACAAGGTTCCAATAAAAGGAGGCTACGAAGAATTCACAACACGTAAA- 10691 Query 904 ATATTTTTATTACCAGCAATGTAGATACATGCGACTTGTATAAATTTCGTAATTATAATA 963 || | || || || || | || ||| | | || || |||||| || | || | Sbjct 10690 --ATATGGATAACAAGTAACATTGACACAGACAAATTATACAAATTTAAAAACTTTATTC 10633 Query 964 CAGACGCAATTGAACGTCGCATTACGGAAAAAAT 997 || |||| ||||| | | ||||| | ||||| Sbjct 10632 CAAACGCTTTTGAAAGACAAATTACAAATAAAAT 10599 >seq34 Length=1051065 Score = 122 bits (134), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 11/239 (5%) Strand=Plus/Plus Query 759 TGGTGGGATGGTTATCAACAGCAGACTAGCGTCATCATCGACGACTTCTATGGATGGATA 818 |||||||| || || |||| || | |||||||||||||||||||||| || || || Sbjct 260260 TGGTGGGACGGATACGAACAACACAAGTGCGTCATCATCGACGACTTCTACGGCTGAATT 260319 Query 819 AAATACGACGAACT---------TCTTAAAATATGTGACCGATATCCATACAAGGTTCAA 869 |||||||||||||| || || ||| ||||| || |||||||| || | Sbjct 260320 AAATACGACGAACTAAAAAAAAAACTAAAGATAACCGACCGCTACCCATACAAAGTACCC 260379 Query 870 ATAAAAGGAGGCTTTGAAGAATTCACCAGTAA-ATATATTTTTATTACCAGCAATGTAGA 928 ||||||||||| | ||| ||| || || || | |||||| || ||| || || || Sbjct 260380 ATAAAAGGAGGGTACGAAAAATCCA-AAGCAACACATATTTGGATAACCTCAAACGTCGA 260438 Query 929 TACATGCGACTTGTATAAATTTCGTAATTATAATACAGACGCAATTGAACGTCGCATTA 987 ||| ||||| ||||| ||||||| | | |||||| ||||||||||||||| Sbjct 260439 CACAATTTTATTGTACAAATTCAAAAATTATACTCCTGACGCATTTGAACGTCGCATTA 260497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5462019502872