Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_024700.1 Length=1773 Score E Sequences producing significant alignments: (Bits) Value seq220 154 2e-34 seq34 138 1e-29 >seq220 Length=254280 Score = 154 bits (170), Expect = 2e-34 Identities = 202/277 (73%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 538 GAATCAATTTACTACAAACCCAGAGGAGATTGGTGGGATGGATACGAACAACAACCAAAT 597 || || || ||||||||||| | ||||| |||||||| |||||| |||||||| | Sbjct 10867 GACTCCATCTACTACAAACCACGCGGAGACTGGTGGGACGGATACCAACAACAAACTTGC 10808 Query 598 GTTATCATCGACGATTTCTACGGATGGATCAAATACGACGAACTATTAAAAATAATGGAT 657 || ||||||||||| |||||||||||||| || ||||||||||| |||||||| || Sbjct 10807 GTCATCATCGACGACTTCTACGGATGGATAAAGTACGACGAACTCCTAAAAATATGCGAC 10748 Query 658 AGATACCCATACAGAGTACCAGTAAAAGGAGGATACCA--AATTTTTAACTCAAAAAGAA 715 | ||||| |||| || ||| |||||||||| ||| | |||| ||| | || || Sbjct 10747 CGCTACCCCTACAAGGTTCCAATAAAAGGAGGCTACGAAGAATTCACAACACGTAA--AA 10690 Query 716 TTTGGATAACATCTAATATCCCCATTGACCAATTATATAAACATTCCCATTTCATTCCCC 775 | ||||||||| ||| || || ||| ||||||| ||| | | || ||||| Sbjct 10689 TATGGATAACAAGTAACATTGACACAGACAAATTATACAAATTTAAAAACTTTATTCCAA 10630 Query 776 AAGCCATCGAAAGACGATGTACAAAAATTGAATATAT 812 | || | ||||||| | ||| |||| ||||||| Sbjct 10629 ACGCTTTTGAAAGACAAATTAC--AAATAAAATATAT 10595 >seq34 Length=1051065 Score = 138 bits (152), Expect = 1e-29 Identities = 146/192 (76%), Gaps = 13/192 (7%) Strand=Plus/Plus Query 551 ACAAACCCAGAGGAGATTGGTGGGATGGATACGAACAACAACCAAAT--GTTATCATCGA 608 |||||| |||| ||||||||||||| |||||||||||||| ||| | || |||||||| Sbjct 260243 ACAAACTCAGAAGAGATTGGTGGGACGGATACGAACAACA--CAAGTGCGTCATCATCGA 260300 Query 609 CGATTTCTACGGATGGATCAAATACGACGAACT---------ATTAAAAATAATGGATAG 659 ||| |||||||| || || |||||||||||||| | |||| |||| || | Sbjct 260301 CGACTTCTACGGCTGAATTAAATACGACGAACTAAAAAAAAAACTAAAGATAACCGACCG 260360 Query 660 ATACCCATACAGAGTACCAGTAAAAGGAGGATACCAAATTTTTAACTCAAAAAGAATTTG 719 |||||||||| |||||| |||||||||| ||| ||| | || ||| | ||||| Sbjct 260361 CTACCCATACAAAGTACCCATAAAAGGAGGGTACGAAAAATCCAAAGCAACACATATTTG 260420 Query 720 GATAACATCTAA 731 |||||| || || Sbjct 260421 GATAACCTCAAA 260432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5564412369944