Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_025476.1 Length=1865 Score E Sequences producing significant alignments: (Bits) Value seq220 125 8e-26 seq34 77.0 4e-11 >seq220 Length=254280 Score = 125 bits (138), Expect = 8e-26 Identities = 140/186 (75%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 894 CTTGTGATCCATATATATTTA---GATACGAAGTTTTCATATCCTCCTTTGACAGGGACT 950 ||||| |||||||| |||| | | ||| | ||| || |||||||| | || || Sbjct 10677 CTTGTTATCCATAT---TTTACGTGTTGTGAATTCTTCGTAGCCTCCTTTTATTGGAACC 10733 Query 951 CTGTAAGGATATCTGTCGCAGATCTTGAGAAGCTCGTCGTATTTGATCCATCCGTAGAAG 1010 |||| || || | |||||| || || || || |||||||| || ||||||||||||||| Sbjct 10734 TTGTAGGGGTAGCGGTCGCATATTTTTAGGAGTTCGTCGTACTTTATCCATCCGTAGAAG 10793 Query 1011 TCATCGATAACAACGCAGGGTTGTCCGGTGTATCCATCCCACCATTCTCCGCGCGGCTTG 1070 || ||||| | ||||| | |||| |||||| |||||||| |||||||| || ||| Sbjct 10794 TCGTCGATGATGACGCAAGTTTGTTGTTGGTATCCGTCCCACCAGTCTCCGCGTGGTTTG 10853 Query 1071 TAGTAG 1076 |||||| Sbjct 10854 TAGTAG 10859 >seq34 Length=1051065 Score = 77.0 bits (84), Expect = 4e-11 Identities = 122/175 (70%), Gaps = 15/175 (9%) Strand=Plus/Minus Query 897 GTGATCCATATATATTTAGATACGAAGTTTTCATATCCTCCTTTGACAGGGACTCTGTAA 956 || ||||| |||| | | | | | | ||||| || |||||||| | || ||| |||| Sbjct 260426 GTTATCCAAATATGTGTTGCTTTGGATTTTTCGTACCCTCCTTTTATGGGTACTTTGTAT 260367 Query 957 GGATATCTGTCGCAGATCTTGAGA---------AGCTCGTCGTATTTGATCCATCCGTAG 1007 || || | |||| ||||| || || ||||||||||| || || |||||| Sbjct 260366 GGGTAGCGGTCGGTTATCTTTAGTTTTTTTTTTAGTTCGTCGTATTTAATTCAGCCGTAG 260307 Query 1008 AAGTCATCGATAACAACGCA---GGGTTGTCCGGTGTATCCATCCCACCATTCTC 1059 ||||| ||||| | ||||| | ||||| | |||||| |||||||| |||| Sbjct 260306 AAGTCGTCGATGATGACGCACTTGTGTTGTTC---GTATCCGTCCCACCAATCTC 260255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5858791862776