Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_025791.1 Length=1755 Score E Sequences producing significant alignments: (Bits) Value seq220 239 5e-60 seq34 145 8e-32 >seq220 Length=254280 Score = 239 bits (264), Expect = 5e-60 Identities = 454/653 (70%), Gaps = 18/653 (3%) Strand=Plus/Plus Query 831 TAAATTTATACAAGTCATCTGTGTCAACGTTACTTGTTATCCATA-TGTATTTGCTGGTG 889 ||||||| || || | |||||||||| ||||||||||||||||| | || || | ||| Sbjct 10645 TAAATTTGTATAATTTGTCTGTGTCAATGTTACTTGTTATCCATATTTTACGTG-TTGTG 10703 Query 890 AATTCCTCGAATCCTCCTTTAATCTGTACCTTGTATGGGTAGCGGTCCATTATTTTCAGC 949 ||||| ||| | |||||||| || | |||||||| ||||||||||| |||||| || Sbjct 10704 AATTCTTCGTAGCCTCCTTTTATTGGAACCTTGTAGGGGTAGCGGTCGCATATTTTTAGG 10763 Query 950 ATTTCGTCATACTTTATCCAGCCGTAGAAGTCGTCGATGATTACGCAATCATGTTGTTGA 1009 | |||||| ||||||||||| |||||||||||||||||||| |||||| |||||||| Sbjct 10764 AGTTCGTCGTACTTTATCCATCCGTAGAAGTCGTCGATGATGACGCAAGTTTGTTGTTGG 10823 Query 1010 TATCCGTCCCACCATAGTCCACGAGGTTTATAGTATATGGAAGTC----CCTCTTTGTTT 1065 |||||||||||||| ||| || ||||| ||||| |||| |||| || | | Sbjct 10824 TATCCGTCCCACCAGTCTCCGCGTGGTTTGTAGTAGATGG-AGTCGGGGGCTGTAGCGGT 10882 Query 1066 AGCCTCCTCAAGTGCACGCTTTGATTTTCCGGAGCCAGGTGGTCCCCAATAGTAGTATAC 1125 ||| || || || || || |||||| || || || || |||||||| || ||||| || Sbjct 10883 AGCTTCTTCTAGGGCTCGTCGTGATTTACCAGATCCTGGAGGTCCCCAGTAATAGTAGAC 10942 Query 1126 TTCTGTTTTGAAATCACGTTCTTTAATAGGCATGACAGTCCGTATATATTCGCGTATTCC 1185 || |||||| | ||| | || || | | | | ||| || || || Sbjct 10943 ATCCGTTTTGTATGAACGGGGTGGGATGGGGTTAGTGATGCTGAGGTATGCGATGATACC 11002 Query 1186 ACGATGGTACCGTATAAATACCGCGGGATGGTCTTCAGCGAtttttttAATG---GTAGC 1242 |||||||| ||||| || ||||| | ||||| || ||| | | Sbjct 11003 TCGATGGTATTTGATAAAAGTCGTTGGATGTTTCGAGGCGATAGCTTCGATGTGTCTTTC 11062 Query 1243 CCCGCTCTGTA-TATCTGAAATACAGGATTGTAGATCAGTACGTTC-TCCTTGCTTATGT 1300 ||| | | | | | | ||| | ||| || || || | ||| |||||| || || Sbjct 11063 ACCGGTAGAAATTGTGTCCACCACA-GCTTGGAGGTC-GTTCCTTCGTCCTTGATTTTGA 11120 Query 1301 GGATGGCCCTGCTCAAAAGTTTCGCCTGATTTT-GAACAGTATTTTTTGTTATCTTCGTC 1359 || ||||| || |||| || |||| ||||||| ||| ||| | |||||| Sbjct 11121 GGCACGCCCTTTTC-AAAGAACATGTTGCTTTTCTTACAGTATGTTTGGTTTTGTTCGTC 11179 Query 1360 GGATCCATTTGCCTTCTCAATATGGATTGAGTTATGGAGATGCTTTTTGA-TTGCTCCAA 1418 |||||| |||||||| ||||||||||| | || || |||| | | ||||| || || || Sbjct 11180 GGATCCGTTTGCCTTTTCAATATGGATAGTGTGATAGAGAAGTTCTTTGATTTTCTTGAA 11239 Query 1419 AGCGCATGGGTTTGTGCAGATTACAGAACCCTTGGAGATGAGGACAGCCTGTT 1471 | | || ||||| | || || || || ||||| ||||| || ||||||| Sbjct 11240 A-CAAATTGGTTTTTCCAAGTTGCAAAAGCCTTGCAGATGTGGCATGCCTGTT 11291 >seq34 Length=1051065 Score = 145 bits (160), Expect = 8e-32 Identities = 190/262 (73%), Gaps = 11/262 (4%) Strand=Plus/Minus Query 772 TTAATCCATGTATTCTTTATTTGTAATACGACGCTCTAGAGCGTCTGTTTTGTAACCAAT 831 ||| | |||| ||||||| || |||| ||||| || | ||||| | | ||| | Sbjct 260520 TTACTGCATGAATTCTTTTATTATAATGCGACGTTCAAATGCGTCAGGAGTATAATTTTT 260461 Query 832 AAATTTATACAAGTCATCTGTGTCAACGTTACTTGTTATCCATATGTAT-TTGCTGGTGA 890 ||||| ||||| | |||||| ||||| |||||||| || | | ||||| || Sbjct 260460 GAATTTGTACAATAAAATTGTGTCGACGTTTGAGGTTATCCAAATATGTGTTGCTT-TGG 260402 Query 891 ATTCCTCGAATCCTCCTTTAATCTGTACCTTGTATGGGTAGCGGTCCATTATTTTCAGCA 950 ||| ||| | |||||||| || |||| ||||||||||||||||| |||| || || Sbjct 260401 ATTTTTCGTACCCTCCTTTTATGGGTACTTTGTATGGGTAGCGGTCGGTTATCTTTAGTT 260342 Query 951 TTT---------CGTCATACTTTATCCAGCCGTAGAAGTCGTCGATGATTACGCAATCAT 1001 ||| |||| || || || ||||||||||||||||||||||| ||||| | | Sbjct 260341 TTTTTTTTAGTTCGTCGTATTTAATTCAGCCGTAGAAGTCGTCGATGATGACGCACTTGT 260282 Query 1002 GTTGTTGATATCCGTCCCACCA 1023 |||||| |||||||||||||| Sbjct 260281 GTTGTTCGTATCCGTCCCACCA 260260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5506816382216