Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_025792.1 Length=1790 Score E Sequences producing significant alignments: (Bits) Value seq220 208 9e-51 seq34 116 4e-23 >seq220 Length=254280 Score = 208 bits (230), Expect = 9e-51 Identities = 471/694 (68%), Gaps = 23/694 (3%) Strand=Plus/Plus Query 881 ATTTTACATGTAATGCGTCTTTCGAACGC---TGCATTATTGTATCCAATAAAGTTGTAA 937 |||||| |||||| ||||||| || || || | || || | |||| ||||| Sbjct 10599 ATTTTATTTGTAATTTGTCTTTCAAAAGCGTTTGGAATAAAGTTTT---TAAATTTGTAT 10655 Query 938 AGTTTATTTGTGTCTACATTGCTCGTAAACCATATG---CGTGTACTTGTAAATTCCTCG 994 | ||| | |||||| | || || || | |||||| ||||| ||| ||||| ||| Sbjct 10656 AATTTGTCTGTGTCAATGTTACTTGTTATCCATATTTTACGTGT---TGTGAATTCTTCG 10712 Query 995 AAcccccccTTTATTTGTACTTTGTAAGGGTATCTGTCAGTAATTTTGAGTAGTTCGTCG 1054 | || || |||||| | || ||||| ||||| | ||| ||||| || ||||||||| Sbjct 10713 TAGCCTCCTTTTATTGGAACCTTGTAGGGGTAGCGGTCGCATATTTTTAGGAGTTCGTCG 10772 Query 1055 TATTTGATCCACCCGTAGAAGTCGTCGATGATGACGTTCTCTTGTTGCTTGTATCCGTCC 1114 || || ||||| |||||||||||||||||||||||| |||||| | |||||||||| Sbjct 10773 TACTTTATCCATCCGTAGAAGTCGTCGATGATGACGCAAGTTTGTTGTTGGTATCCGTCC 10832 Query 1115 CACCACAAGCCCCTTGGCTTGTAGTAGATACTTTCTGCGTTGATACTCTCCGCTTCTTC- 1173 ||||| || | ||| ||||||||||| || | | || |||||||| Sbjct 10833 CACCAGTCTCCGCGTGGTTTGTAGTAGATGGAGTCGGGGGCTGTAGCGGTAGCTTCTTCT 10892 Query 1174 AGAGCTC-TCCTGCTTTTGCCAGTCCCAGGCGGTCCCCAATAGTAGTAGACCCAGGTTTT 1232 || |||| || || ||| |||| || || |||||||| || |||||||| ||||| Sbjct 10893 AGGGCTCGTCGTG-ATTTACCAGATCCTGGAGGTCCCCAGTAATAGTAGACATCCGTTTT 10951 Query 1233 GTGTCTACGCGGCGTAATAGGATGTTGT-ATTTTGAGGTATTCGTTGATTCCTTTATAGT 1291 || | ||| || | || || | | || || |||||||| || |||| ||| || || Sbjct 10952 GTATGAACGGGGTGGGATGGGGT-TAGTGATGCTGAGGTATGCGATGATACCTCGATGGT 11010 Query 1292 ACTTGATATAAGCGATGGGATATAGCTGTGCAATGGCCTGTGTGGTGTTGGTC-CCGTTC 1350 | |||||| ||| | |||| | | || || | || | |||| || ||| | Sbjct 11011 ATTTGATAAAAGTCGTTGGATGTTTCGAGGCGATAG-CTTCGATGTGTCTTTCACCGGTA 11069 Query 1351 TGTATGGCAGAAACCACGTCGGCAAGATCGGATCTTGATCCTTGGCTGCATGGCGTTCCC 1410 || | ||||| | || ||| ||| |||||| | ||| ||| Sbjct 11070 GAAATTGTGTCCACCACAGCTTGGAGGTCGTTCCTTCGTCCTTGATTTTGAGGCACGCCC 11129 Query 1411 TGTTCAA--ACCAAGTACCTGATTTTTTACAGTAAGCTTGGTTTTGTTCGTCGGATCCAT 1468 | ||||| | || || || ||| |||||||| | ||||||||||||||||||||| | Sbjct 11130 TTTTCAAAGAACATGTTGCT--TTTCTTACAGTATGTTTGGTTTTGTTCGTCGGATCCGT 11187 Query 1469 TTGCCTTCTCAATATGGATTCCGTTATGCAGATGCTTTTTGATGGTACTGAAGCGCATGG 1528 ||||||| ||||||||||| || || ||| | | |||||| | |||| | || | Sbjct 11188 TTGCCTTTTCAATATGGATAGTGTGATAGAGAAGTTCTTTGATTTTCTTGAAACAAATTG 11247 Query 1529 GCTTTGATAAATTAGCGAACCCCTGCAGATGAGG 1562 | ||| || || || || |||||||| || Sbjct 11248 GTTTTTCCAAGTTGCAAAAGCCTTGCAGATGTGG 11281 >seq34 Length=1051065 Score = 116 bits (128), Expect = 4e-23 Identities = 145/200 (73%), Gaps = 9/200 (5%) Strand=Plus/Minus Query 929 AAGTTGTAAAGTTTATTTGTGTCTACATTGCTCGTAAACCATATGCGTGTACTTGTAAAT 988 || ||||| | | | ||||||| || || || | ||| || |||| | | || Sbjct 260459 AATTTGTACAATAAAATTGTGTCGACGTTTGAGGTTATCCAAATATGTGTTGCTTTGGAT 260400 Query 989 TCCTCGAAcccccccTTTATTTGTACTTTGTAAGGGTATCTGTCAGTAATTTTGAGT--- 1045 | ||| |||| || ||||| |||||||||| ||||| | ||| || || || ||| Sbjct 260399 TTTTCGTACCCTCCTTTTATGGGTACTTTGTATGGGTAGCGGTCGGTTATCTTTAGTTTT 260340 Query 1046 ------AGTTCGTCGTATTTGATCCACCCGTAGAAGTCGTCGATGATGACGTTCTCTTGT 1099 |||||||||||||| || || |||||||||||||||||||||||| || ||| Sbjct 260339 TTTTTTAGTTCGTCGTATTTAATTCAGCCGTAGAAGTCGTCGATGATGACGCACTTGTGT 260280 Query 1100 TGCTTGTATCCGTCCCACCA 1119 || | ||||||||||||||| Sbjct 260279 TGTTCGTATCCGTCCCACCA 260260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5618808580576