Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_027530.1 Length=1789 Score E Sequences producing significant alignments: (Bits) Value seq220 241 1e-60 seq34 96.9 4e-17 >seq220 Length=254280 Score = 241 bits (266), Expect = 1e-60 Identities = 453/653 (69%), Gaps = 25/653 (4%) Strand=Plus/Plus Query 817 TTCAAATTTATACAATAAATCTGTATCAACATTACTTGTAATCCAAATATATTTA---GT 873 || |||||| || ||| ||||| |||| |||||||| ||||| || |||| || Sbjct 10643 TTTAAATTTGTATAATTTGTCTGTGTCAATGTTACTTGTTATCCATAT---TTTACGTGT 10699 Query 874 TGTGAATTCCTCGAACCCTCCTTTAATCTGAACTTTATACGGATAACGATC-CATAATTT 932 ||||||||| ||| | |||||||| || |||| || || || || || || ||| |||| Sbjct 10700 TGTGAATTCTTCGTAGCCTCCTTTTATTGGAACCTTGTAGGGGTAGCGGTCGCAT-ATTT 10758 Query 933 TAAGCATTTCATCATACTTTATCCATCCATAGAAATCATCTATGATGACGCATGTTTGCT 992 | || | ||| || |||||||||||||| ||||| || || ||||||||||| ||||| | Sbjct 10759 TTAGGAGTTCGTCGTACTTTATCCATCCGTAGAAGTCGTCGATGATGACGCAAGTTTGTT 10818 Query 993 GAGCGTAGCCGTCCCACCAGAGACCTCTAGGTTTGTAGTAAATGGAATCCAGCCCTCTGA 1052 | ||| |||||||||||| || | ||||||||||| ||||| || | || | Sbjct 10819 GTTGGTATCCGTCCCACCAGTCTCCGCGTGGTTTGTAGTAGATGGAGTCGGGGGCTGTAG 10878 Query 1053 TTTTAGCTTCTTCCAAGGCT-GTCCTAGATTTGCCAGTCCCCGGTTCTCCGTAGTAGTAG 1111 |||||||||| | |||| ||| | ||||| |||| || || ||| |||| ||| Sbjct 10879 CGGTAGCTTCTTCTAGGGCTCGTCGT-GATTTACCAGATCCTGGAGGTCCCCAGTAATAG 10937 Query 1112 AAGACCTCAGTTTTGAAGTCTCTAACG----GGAATAGGTCGCACGGTTTTGATGTACTC 1167 |||| || |||||| | |||| || || || | | ||| ||| | Sbjct 10938 TAGACATCCGTTTTGTA----TGAACGGGGTGGGATGGGGTTAGTGATGCTGAGGTATGC 10993 Query 1168 TTTGATTCCACGATGATATTTGATAAAACTGGTGGGGTGAGCCCTAGCCACTGATTCGAT 1227 |||| || ||||| |||||||||||| | || || || | || | | |||||| Sbjct 10994 GATGATACCTCGATGGTATTTGATAAAAGTCGTTGGATGTTTCGAGGCGATAGCTTCGAT 11053 Query 1228 GT---CCGCTCCGTTCGATATGGTATCCACGACGGCCGCCAAATCATTTCTCTTCCCTTG 1284 || | ||| | || || || ||||| || || | || || || ||||| Sbjct 11054 GTGTCTTTCACCGGTAGAAATTGTGTCCACCACAGCTTGGAGGTCGTTCCTTCGTCCTTG 11113 Query 1285 CGATTGAGGCACACCCGATTCAAAAAACTGGCCTGCTTTT-GAACAGTATTTTTGGTTGT 1343 ||||||||| ||| |||||| ||| | ||||||| ||||||| ||||||| | Sbjct 11114 ATTTTGAGGCACGCCCTTTTCAAAGAACATG-TTGCTTTTCTTACAGTATGTTTGGTTTT 11172 Query 1344 CTTCGTCGGATCCAGCTGCCTTCTCAATATGGATTCTGTTATCGAGATGCTTCTTGATGG 1403 |||||||||||| |||||| ||||||||||| ||| || |||| | | ||||| Sbjct 11173 GTTCGTCGGATCCGTTTGCCTTTTCAATATGGATAGTGTGATAGAGAAGTTCTTTGATTT 11232 Query 1404 TACTAAAGCGCATGGGTTTTGCAAGACTTGC-GAATCCTTGTAAATGAGGCAT 1455 | | || | || |||||| | | | |||| || ||||| | ||| ||||| Sbjct 11233 TCTTGAAACAAATTGGTTTTTCCA-AGTTGCAAAAGCCTTGCAGATGTGGCAT 11284 >seq34 Length=1051065 Score = 96.9 bits (106), Expect = 4e-17 Identities = 181/265 (68%), Gaps = 11/265 (4%) Strand=Plus/Minus Query 757 ATATTAATGGAATAAtttttttATTGACAAT-CTCCTTTCAAAAGCCGCAGTATTGTAAC 815 || ||| || | |||| ||||||| | ||| | | |||||| || ||| | | ||| Sbjct 260523 ATGTTACTGCATGAATTCTTTTATT-ATAATGCGACGTTCAAATGCGTCAGGAGTATAAT 260465 Query 816 CTTCAAATTTATACAATAAATCTGTATCAACATTACTTGTAATCCAAATATATTTAGTTG 875 || ||||| ||||||||| ||| || || || || |||||||||| | | | | Sbjct 260464 TTTTGAATTTGTACAATAAAATTGTGTCGACGTTTGAGGTTATCCAAATATGTGTTGCTT 260405 Query 876 TGAATTCCTCGAACCCTCCTTTAATCTGAACTTTATACGGATAACGATCCATAATTTTAA 935 || ||| ||| |||||||||| || | ||||| || || || || || | || || | Sbjct 260404 TGGATTTTTCGTACCCTCCTTTTATGGGTACTTTGTATGGGTAGCGGTCGGTTATCTTTA 260345 Query 936 GCATTT---------CATCATACTTTATCCATCCATAGAAATCATCTATGATGACGCATG 986 | ||| | || || || || || || ||||| || || ||||||||||| Sbjct 260344 GTTTTTTTTTTAGTTCGTCGTATTTAATTCAGCCGTAGAAGTCGTCGATGATGACGCACT 260285 Query 987 TTTGCTGAGCGTAGCCGTCCCACCA 1011 | || || |||| ||||||||||| Sbjct 260284 TGTGTTGTTCGTATCCGTCCCACCA 260260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5615608803480