Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_012685.1 Length=5759 Score E Sequences producing significant alignments: (Bits) Value seq9073 84.2 8e-13 >seq9073 Length=25145 Score = 84.2 bits (92), Expect = 8e-13 Identities = 221/331 (67%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 2233 AATTTCAATTTGAGGATAACGACGAAAAAATCACTCAATTTTTAGTAGATTTAATTGATG 2292 ||||||||||| | || | | |||||||| |||||||| | |||||| | ||| Sbjct 14302 AATTTCAATTTTATAATGATAATGAAAAAATTTTAAAATTTTTACTTGATTTATATAATG 14361 Query 2293 TACTTGATAAACGAGTTCCAAAACAAAATGCTTTTGCAGTAATTTCGCCACCTAGTTCAG 2352 || | |||||| |||| ||| ||||| || | || | || ||||||| | | | Sbjct 14362 TAATAGATAAAAATATTCCTAAAAAAAATACTATATTTGTGTTATCACCACCTAATGCTG 14421 Query 2353 GCAAAAATTTTTTCTTTGACATGATTATGGCAAT-TTGTTTAAACTATGGACAATTAGGA 2411 | ||||||||||| ||||| | |||| || | ||||||||| | || ||| ||||| Sbjct 14422 GAAAAAATTTTTTTTTTGATACATTTAT-TCATTATTGTTTAAATTTCGGTCAAGTAGGA 14480 Query 2412 CAAGCAAACAGACATAATTTGTTTGCATTTCAAGAAGCTCCCAATAAAAGATTAT--TAC 2469 | || || || || ||| || | ||| | | | | |||| || ||| Sbjct 14481 AATTTCAATCGATATTGTTCGTTCCCACTAATGGAA--TGCGTAGACAAGAGAATTATAC 14538 Query 2470 TTTGGAATGAACCAAACTATGAAAGC--GCAATGACAGATACAATAAAAATGATGATGGG 2527 | ||||||||||| | ||| | ||| || ||||| ||| |||||||| | | || Sbjct 14539 TATGGAATGAACC--ATTATTAGAGCCATCAGCAACAGAAACATTAAAAATGCTTTTTGG 14596 Query 2528 CGGAGATCCATATACTGTAAGAGTAAAATAT 2558 || ||| || | ||| | ||| |||||| Sbjct 14597 AGGTGATACAGTTGCTGCTAAAGTTAAATAT 14627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18299436532200