Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_030296.1 Length=5071 Score E Sequences producing significant alignments: (Bits) Value seq9073 87.8 6e-14 >seq9073 Length=25145 Score = 87.8 bits (96), Expect = 6e-14 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 1895 GATCTATATGACGTACTCGAAAAACGTATAGCTaaaaaaaaTACCTTTTTTGTTCTCTCC 1954 ||| ||||| | ||| | || ||| ||| ||||||||||||| | ||||| | || Sbjct 14349 GATTTATATAATGTAATAGATAAAAATATTCCTAAAAAAAATACTATATTTGTGTTATCA 14408 Query 1955 CCATCGAATGCTGGCAAAAATTTTTTCTTCGATTGCATTGTACATTTTTATTTGAATTTC 2014 ||| | |||||||| ||||||||||| || ||| || | |||| || ||| |||||| Sbjct 14409 CCACCTAATGCTGGAAAAAATTTTTTTTTTGATACATTTATTCATTATTGTTTAAATTTC 14468 Query 2015 GGTCTGATCGGTAATTTTAAT 2035 |||| | || ||||| ||| Sbjct 14469 GGTCAAGTAGGAAATTTCAAT 14489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16099923545800