Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_012636.1 Length=3776 Score E Sequences producing significant alignments: (Bits) Value seq686 78.8 2e-11 >seq686 Length=121447 Score = 78.8 bits (86), Expect = 2e-11 Identities = 164/242 (68%), Gaps = 12/242 (5%) Strand=Plus/Plus Query 2004 ACAAATGCAGGAAAATCACTAATATTGGACAATTTATTAGCAATGGTAAAACCAGAAGAA 2063 |||||| ||||||||||| || || | || ||||| | || ||||| | | Sbjct 21837 ACAAATACAGGAAAATCATTATTAATAAACGCACTATTAAAACCATTAGAACCAACATTA 21896 Query 2064 ATACCACGAGAAAGAGACAACAGTGGATTCCACCTTGATCAAGTACCAGGAGCAGGATCA 2123 || |||||| |||||| || ||||| ||| | || ||| |||| ||| || | Sbjct 21897 ATTAGTCGAGAACGAGACAGAAGCGGATTTCACTTAGACCAATTACCTACAGCCGGGTAT 21956 Query 2124 ATCCTATTTGAAGAACCAAT----GATCACACCAGTAAACGTCGGAACATGGAAATTATT 2179 | ||||||||||||||||| ||| |||| | || | || |||||||||||| | Sbjct 21957 GTACTATTTGAAGAACCAATAATAGATAACACTAATA----TTGGCACATGGAAATTACT 22012 Query 2180 ACTAGAAGGA--AAAACCATAAAAACGGATGTGAAAAATAAAGACAAAGAGCCGATAGAA 2237 | | |||||| | ||| ||| ||| ||| | || || || ||||| |||||| Sbjct 22013 AATGGAAGGATCAGAAC--TAACAACAGATATAAAGAACCAATCAAAAGAAATAATAGAA 22070 Query 2238 CG 2239 || Sbjct 22071 CG 22072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11969034727905