Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_004290.1 Length=5234 Score E Sequences producing significant alignments: (Bits) Value seq42220 407 5e-110 >seq42220 Length=249 Score = 407 bits (450), Expect = 5e-110 Identities = 241/250 (96%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 4984 CTGGTTCATTTGTAGGTAGTCTGTCGTAGGGGTGACTACGATTCCACCATCTCCCAAATC 5043 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 CTGGTTCATTTGTAGGTAGTCTGTC-TAGGGGTGACTACGATTCCACCATCTCCCAAATC 59 Query 5044 TATTACGAAGTTTAGGTGTATTTGCTAAAGGTAAATTATTAGTACCTAAACTGAAATCAC 5103 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 60 TATTACGAAGTTTAGGTGTATTTGCTAAAGGTAAATTATTGGTACCTAAACTGAAATCAC 119 Query 5104 GCAACGTGAGATCTGTAAAGACGCCAGACATTTAATACTACGATGCTAAAACTTCCGCTT 5163 | ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 120 GTAACGTGAGATCTGTAAAGACGTCAGACATTTAATACTACGACGCTAAAACTTCCGCTT 179 Query 5164 ATATACCTTCTGACGTCAGCGAAATAGAAGAAGTGCCTGGGTGCTTGCTCTTTATATCCT 5223 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 180 ATATACCTTCTGACGTCAGCAAAATAGAAGAAGTGCCTGGGTGCTTGCTCTTTATATCCG 239 Query 5224 TCGGATATAA 5233 |||||||| Sbjct 240 AAGGATATAA 249 Score = 91.5 bits (100), Expect = 5e-15 Identities = 72/85 (85%), Gaps = 6/85 (7%) Strand=Plus/Minus Query 1 TTATATCCTTAGGATATAAAGAGCAAGCACCCAGGCACTTCTTCTATTCTG----CCTCA 56 |||||||||| ||||||||||||||||||||||||||||||||||||| || | ||| Sbjct 249 TTATATCCTTCGGATATAAAGAGCAAGCACCCAGGCACTTCTTCTATTTTGCTGACGTCA 190 Query 57 GATCGTCGATATAAGCGGAGCTTTT 81 || || ||||||||||| |||| Sbjct 189 GAAGGT--ATATAAGCGGAAGTTTT 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16624151430885