Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_005041.2
Length=5335
Score E
Sequences producing significant alignments: (Bits) Value
SEQ21319 98.7 3e-17
seq4973 98.7 3e-17
SEQ21320 87.8 6e-14
SEQ21318 87.8 6e-14
>SEQ21319
Length=5058
Score = 98.7 bits (108), Expect = 3e-17
Identities = 154/218 (71%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 2115 CCACCTAGTGCTGGGAAAAACTTTTTCTTTGATGGTGTTAAGGATTATTATTTGAATTCA 2174
||||| | |||||| ||||| ||||| |||||| | ||| | |||| ||| ||||
Sbjct 4180 CCACCAAATGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTT 4121
Query 2175 GGACAGATGAACAATCCTAATAAATATAATCAATTTGCATATCAGGATTGCCATAATAGA 2234
|| ||| | ||| ||||| |||| | |||| ||| ||| || | |||||
Sbjct 4120 GGTCAGGTTGGAAATTTTAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAGA 4061
Query 2235 AGGATTATTATATGGAATGAACC-TAATTATGAACCAAGGGAAATGGAGAACTTAAAAAT 2293
|| |||||| ||||||||||||| | |||| || || | || |||| ||||||||
Sbjct 4060 AGAATTATTTTATGGAATGAACCATTATTA-GAGCCTTCTGCTATTGAGACATTAAAAAT 4002
Query 2294 GCTGTTTGCTGGTGATAATTTGTCTGCCAATGTAAAAT 2331
||| |||| |||||||| | | | || || || ||||
Sbjct 4001 GCTCTTTGGTGGTGATACTGTAACAGCAAAAGTTAAAT 3964
>seq4973
Length=13628
Score = 98.7 bits (108), Expect = 3e-17
Identities = 154/218 (71%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 2115 CCACCTAGTGCTGGGAAAAACTTTTTCTTTGATGGTGTTAAGGATTATTATTTGAATTCA 2174
||||| | |||||| ||||| ||||| |||||| | ||| | |||| ||| ||||
Sbjct 5901 CCACCAAATGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTT 5842
Query 2175 GGACAGATGAACAATCCTAATAAATATAATCAATTTGCATATCAGGATTGCCATAATAGA 2234
|| ||| | ||| ||||| |||| | |||| ||| ||| || | |||||
Sbjct 5841 GGTCAGGTTGGAAATTTTAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAGA 5782
Query 2235 AGGATTATTATATGGAATGAACC-TAATTATGAACCAAGGGAAATGGAGAACTTAAAAAT 2293
|| |||||| ||||||||||||| | |||| || || | || |||| ||||||||
Sbjct 5781 AGAATTATTTTATGGAATGAACCATTATTA-GAGCCTTCTGCTATTGAGACATTAAAAAT 5723
Query 2294 GCTGTTTGCTGGTGATAATTTGTCTGCCAATGTAAAAT 2331
||| |||| |||||||| | | | || || || ||||
Sbjct 5722 GCTCTTTGGTGGTGATACTGTAACAGCAAAAGTTAAAT 5685
>SEQ21320
Length=31550
Score = 87.8 bits (96), Expect = 6e-14
Identities = 154/219 (70%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 2115 CCACCTAGTGCTGGGAAAAACTTTTTCTTTGATGGTGTTAAGGATTATTATTTGAATTCA 2174
||||| | |||||| ||||| ||||| |||||| | ||| | |||| ||| ||||
Sbjct 2842 CCACCAAATGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTT 2783
Query 2175 GGACAGAT-GAACAATCCTAATAAATATAATCAATTTGCATATCAGGATTGCCATAATAG 2233
|| ||| | ||| ||| ||||| |||| | |||| ||| ||| || | ||||
Sbjct 2782 GGTCAGGTTGAAAAATT-TAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAG 2724
Query 2234 AAGGATTATTATATGGAATGAACC-TAATTATGAACCAAGGGAAATGGAGAACTTAAAAA 2292
||| || ||| ||||||||||||| | |||| || || | | |||| |||||||
Sbjct 2723 AAGAATGATTTTATGGAATGAACCATTATTA-GAGCCTTCTGCTACTGAGACATTAAAAA 2665
Query 2293 TGCTGTTTGCTGGTGATAATTTGTCTGCCAATGTAAAAT 2331
|||| |||| | |||||| | | | || || || ||||
Sbjct 2664 TGCTCTTTGGTAGTGATACTGTAACAGCAAAAGTTAAAT 2626
>SEQ21318
Length=45390
Score = 87.8 bits (96), Expect = 6e-14
Identities = 154/219 (70%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 2115 CCACCTAGTGCTGGGAAAAACTTTTTCTTTGATGGTGTTAAGGATTATTATTTGAATTCA 2174
||||| | |||||| ||||| ||||| |||||| | ||| | |||| ||| ||||
Sbjct 44126 CCACCAAATGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTT 44067
Query 2175 GGACAGAT-GAACAATCCTAATAAATATAATCAATTTGCATATCAGGATTGCCATAATAG 2233
|| ||| | ||| ||| ||||| |||| | |||| ||| ||| || | ||||
Sbjct 44066 GGTCAGGTTGAAAAATT-TAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAG 44008
Query 2234 AAGGATTATTATATGGAATGAACC-TAATTATGAACCAAGGGAAATGGAGAACTTAAAAA 2292
||| || ||| ||||||||||||| | |||| || || | | |||| |||||||
Sbjct 44007 AAGAATGATTTTATGGAATGAACCATTATTA-GAGCCTTCTGCTACTGAGACATTAAAAA 43949
Query 2293 TGCTGTTTGCTGGTGATAATTTGTCTGCCAATGTAAAAT 2331
|||| |||| | |||||| | | | || || || ||||
Sbjct 43948 TGCTCTTTGGTAGTGATACTGTAACAGCAAAAGTTAAAT 43910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16955336159000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |