Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_005041.2 Length=5335 Score E Sequences producing significant alignments: (Bits) Value SEQ21319 98.7 3e-17 seq4973 98.7 3e-17 SEQ21320 87.8 6e-14 SEQ21318 87.8 6e-14 >SEQ21319 Length=5058 Score = 98.7 bits (108), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 2115 CCACCTAGTGCTGGGAAAAACTTTTTCTTTGATGGTGTTAAGGATTATTATTTGAATTCA 2174 ||||| | |||||| ||||| ||||| |||||| | ||| | |||| ||| |||| Sbjct 4180 CCACCAAATGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTT 4121 Query 2175 GGACAGATGAACAATCCTAATAAATATAATCAATTTGCATATCAGGATTGCCATAATAGA 2234 || ||| | ||| ||||| |||| | |||| ||| ||| || | ||||| Sbjct 4120 GGTCAGGTTGGAAATTTTAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAGA 4061 Query 2235 AGGATTATTATATGGAATGAACC-TAATTATGAACCAAGGGAAATGGAGAACTTAAAAAT 2293 || |||||| ||||||||||||| | |||| || || | || |||| |||||||| Sbjct 4060 AGAATTATTTTATGGAATGAACCATTATTA-GAGCCTTCTGCTATTGAGACATTAAAAAT 4002 Query 2294 GCTGTTTGCTGGTGATAATTTGTCTGCCAATGTAAAAT 2331 ||| |||| |||||||| | | | || || || |||| Sbjct 4001 GCTCTTTGGTGGTGATACTGTAACAGCAAAAGTTAAAT 3964 >seq4973 Length=13628 Score = 98.7 bits (108), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 2115 CCACCTAGTGCTGGGAAAAACTTTTTCTTTGATGGTGTTAAGGATTATTATTTGAATTCA 2174 ||||| | |||||| ||||| ||||| |||||| | ||| | |||| ||| |||| Sbjct 5901 CCACCAAATGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTT 5842 Query 2175 GGACAGATGAACAATCCTAATAAATATAATCAATTTGCATATCAGGATTGCCATAATAGA 2234 || ||| | ||| ||||| |||| | |||| ||| ||| || | ||||| Sbjct 5841 GGTCAGGTTGGAAATTTTAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAGA 5782 Query 2235 AGGATTATTATATGGAATGAACC-TAATTATGAACCAAGGGAAATGGAGAACTTAAAAAT 2293 || |||||| ||||||||||||| | |||| || || | || |||| |||||||| Sbjct 5781 AGAATTATTTTATGGAATGAACCATTATTA-GAGCCTTCTGCTATTGAGACATTAAAAAT 5723 Query 2294 GCTGTTTGCTGGTGATAATTTGTCTGCCAATGTAAAAT 2331 ||| |||| |||||||| | | | || || || |||| Sbjct 5722 GCTCTTTGGTGGTGATACTGTAACAGCAAAAGTTAAAT 5685 >SEQ21320 Length=31550 Score = 87.8 bits (96), Expect = 6e-14 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 2115 CCACCTAGTGCTGGGAAAAACTTTTTCTTTGATGGTGTTAAGGATTATTATTTGAATTCA 2174 ||||| | |||||| ||||| ||||| |||||| | ||| | |||| ||| |||| Sbjct 2842 CCACCAAATGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTT 2783 Query 2175 GGACAGAT-GAACAATCCTAATAAATATAATCAATTTGCATATCAGGATTGCCATAATAG 2233 || ||| | ||| ||| ||||| |||| | |||| ||| ||| || | |||| Sbjct 2782 GGTCAGGTTGAAAAATT-TAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAG 2724 Query 2234 AAGGATTATTATATGGAATGAACC-TAATTATGAACCAAGGGAAATGGAGAACTTAAAAA 2292 ||| || ||| ||||||||||||| | |||| || || | | |||| ||||||| Sbjct 2723 AAGAATGATTTTATGGAATGAACCATTATTA-GAGCCTTCTGCTACTGAGACATTAAAAA 2665 Query 2293 TGCTGTTTGCTGGTGATAATTTGTCTGCCAATGTAAAAT 2331 |||| |||| | |||||| | | | || || || |||| Sbjct 2664 TGCTCTTTGGTAGTGATACTGTAACAGCAAAAGTTAAAT 2626 >SEQ21318 Length=45390 Score = 87.8 bits (96), Expect = 6e-14 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 2115 CCACCTAGTGCTGGGAAAAACTTTTTCTTTGATGGTGTTAAGGATTATTATTTGAATTCA 2174 ||||| | |||||| ||||| ||||| |||||| | ||| | |||| ||| |||| Sbjct 44126 CCACCAAATGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTT 44067 Query 2175 GGACAGAT-GAACAATCCTAATAAATATAATCAATTTGCATATCAGGATTGCCATAATAG 2233 || ||| | ||| ||| ||||| |||| | |||| ||| ||| || | |||| Sbjct 44066 GGTCAGGTTGAAAAATT-TAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAG 44008 Query 2234 AAGGATTATTATATGGAATGAACC-TAATTATGAACCAAGGGAAATGGAGAACTTAAAAA 2292 ||| || ||| ||||||||||||| | |||| || || | | |||| ||||||| Sbjct 44007 AAGAATGATTTTATGGAATGAACCATTATTA-GAGCCTTCTGCTACTGAGACATTAAAAA 43949 Query 2293 TGCTGTTTGCTGGTGATAATTTGTCTGCCAATGTAAAAT 2331 |||| |||| | |||||| | | | || || || |||| Sbjct 43948 TGCTCTTTGGTAGTGATACTGTAACAGCAAAAGTTAAAT 43910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16955336159000