Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_006555.1 Length=5039 Score E Sequences producing significant alignments: (Bits) Value SEQ21319 109 2e-20 seq4973 105 2e-19 SEQ21320 100 9e-18 SEQ21318 100 9e-18 SEQ19609 95.1 4e-16 seq9740 89.7 2e-14 seq7769 89.7 2e-14 >SEQ21319 Length=5058 Score = 109 bits (120), Expect = 2e-20 Identities = 215/314 (68%), Gaps = 8/314 (3%) Strand=Plus/Minus Query 2241 TGCTGGTAAAAATTATTTTATAGACGCTATATTGTCCTTTTATTTGAATACTGGAATTAT 2300 |||||||||||||| |||| | || || | | || || ||| ||| ||| | | Sbjct 4172 TGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTTGG--TCAG 4115 Query 2301 ATT--AAACTTTAATAGATTTAGTCAATTTCCACTTATGGAAGCTGTTAATAGACGTGTA 2358 || ||| |||||||||| | || ||||||| | ||||| |||| ||||| | | Sbjct 4114 GTTGGAAATTTTAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAGAAGAATT 4055 Query 2359 AATGTATGGAATGAACCTAATTTTGAACCTGCAGCTTTAGACACCATAAAAATGTTGTTA 2418 | | ||||||||||||| || || ||| | ||| | || || |||||||| | || Sbjct 4054 ATTTTATGGAATGAACCATTATTAGAGCCTTCTGCTATTGAGACATTAAAAATGCTCTTT 3995 Query 2419 GCTGGTGATCCTTTAAAAGTAAATGTAAAATATCAAAAAGAACAATATTTGCAAAAAACT 2478 | ||||||| || ||| || ||| || |||||| || || | | | ||| Sbjct 3994 GGTGGTGATACTGTAACAGCAAAAGTTAAATATTGTAATGATGCTGTTATAATGAGAACA 3935 Query 2479 CCTATAATTGTAATGACAAACAAACCTGTATTTCCAAACGATTTAGCTTTTCATGATCGT 2538 ||||| || | || | || || |||||||||||| ||||||||||||| |||| Sbjct 3934 CCTATTATAATTTTGTCTAATAATGATGTATTTCCAAATGATTTAGCTTTTC--GATCTA 3877 Query 2539 GTATGT--ACCTAT 2550 | |||| |||||| Sbjct 3876 GAATGTTCACCTAT 3863 >seq4973 Length=13628 Score = 105 bits (116), Expect = 2e-19 Identities = 214/314 (68%), Gaps = 8/314 (3%) Strand=Plus/Minus Query 2241 TGCTGGTAAAAATTATTTTATAGACGCTATATTGTCCTTTTATTTGAATACTGGAATTAT 2300 |||||||||||||| |||| | || || | | || || ||| ||| ||| | | Sbjct 5893 TGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTTGG--TCAG 5836 Query 2301 ATT--AAACTTTAATAGATTTAGTCAATTTCCACTTATGGAAGCTGTTAATAGACGTGTA 2358 || ||| |||||||||| | || ||||||| | ||||| |||| ||||| | | Sbjct 5835 GTTGGAAATTTTAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAGAAGAATT 5776 Query 2359 AATGTATGGAATGAACCTAATTTTGAACCTGCAGCTTTAGACACCATAAAAATGTTGTTA 2418 | | ||||||||||||| || || ||| | ||| | || || |||||||| | || Sbjct 5775 ATTTTATGGAATGAACCATTATTAGAGCCTTCTGCTATTGAGACATTAAAAATGCTCTTT 5716 Query 2419 GCTGGTGATCCTTTAAAAGTAAATGTAAAATATCAAAAAGAACAATATTTGCAAAAAACT 2478 | ||||||| || ||| || ||| || |||||| || || | | | ||| Sbjct 5715 GGTGGTGATACTGTAACAGCAAAAGTTAAATATTGTAATGATGCTGTTATAATGAGAACA 5656 Query 2479 CCTATAATTGTAATGACAAACAAACCTGTATTTCCAAACGATTTAGCTTTTCATGATCGT 2538 ||||| || | || | || || |||||||||||| ||| ||||||||| |||| Sbjct 5655 CCTATTATAATTTTGTCTAATAACGATGTATTTCCAAATGATGTAGCTTTTC--GATCTA 5598 Query 2539 GTATGT--ACCTAT 2550 | |||| |||||| Sbjct 5597 GAATGTTCACCTAT 5584 >SEQ21320 Length=31550 Score = 100 bits (110), Expect = 9e-18 Identities = 213/314 (68%), Gaps = 8/314 (3%) Strand=Plus/Minus Query 2241 TGCTGGTAAAAATTATTTTATAGACGCTATATTGTCCTTTTATTTGAATACTGGAATTAT 2300 |||||||||||||| |||| | || || | | || || ||| ||| ||| | | Sbjct 2834 TGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTTGG--TCAG 2777 Query 2301 ATT--AAACTTTAATAGATTTAGTCAATTTCCACTTATGGAAGCTGTTAATAGACGTGTA 2358 || ||| |||||||||| | || ||||||| | ||||| |||| ||||| | | Sbjct 2776 GTTGAAAAATTTAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAGAAGAATG 2717 Query 2359 AATGTATGGAATGAACCTAATTTTGAACCTGCAGCTTTAGACACCATAAAAATGTTGTTA 2418 | | ||||||||||||| || || ||| | ||| || || |||||||| | || Sbjct 2716 ATTTTATGGAATGAACCATTATTAGAGCCTTCTGCTACTGAGACATTAAAAATGCTCTTT 2657 Query 2419 GCTGGTGATCCTTTAAAAGTAAATGTAAAATATCAAAAAGAACAATATTTGCAAAAAACT 2478 | | ||||| || ||| || ||| || |||||| || || | | | ||| Sbjct 2656 GGTAGTGATACTGTAACAGCAAAAGTTAAATATTGTAATGATGCTGTTATAATGAGAACA 2597 Query 2479 CCTATAATTGTAATGACAAACAAACCTGTATTTCCAAACGATTTAGCTTTTCATGATCGT 2538 ||||| || | || | || || |||||||||||| ||||||||||||| |||| Sbjct 2596 CCTATTATAATTTTGTCTAATAATGATGTATTTCCAAATGATTTAGCTTTTC--GATCTA 2539 Query 2539 GTATGT--ACCTAT 2550 | |||| |||||| Sbjct 2538 GAATGTTCACCTAT 2525 >SEQ21318 Length=45390 Score = 100 bits (110), Expect = 9e-18 Identities = 213/314 (68%), Gaps = 8/314 (3%) Strand=Plus/Minus Query 2241 TGCTGGTAAAAATTATTTTATAGACGCTATATTGTCCTTTTATTTGAATACTGGAATTAT 2300 |||||||||||||| |||| | || || | | || || ||| ||| ||| | | Sbjct 44118 TGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTTGG--TCAG 44061 Query 2301 ATT--AAACTTTAATAGATTTAGTCAATTTCCACTTATGGAAGCTGTTAATAGACGTGTA 2358 || ||| |||||||||| | || ||||||| | ||||| |||| ||||| | | Sbjct 44060 GTTGAAAAATTTAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAGAAGAATG 44001 Query 2359 AATGTATGGAATGAACCTAATTTTGAACCTGCAGCTTTAGACACCATAAAAATGTTGTTA 2418 | | ||||||||||||| || || ||| | ||| || || |||||||| | || Sbjct 44000 ATTTTATGGAATGAACCATTATTAGAGCCTTCTGCTACTGAGACATTAAAAATGCTCTTT 43941 Query 2419 GCTGGTGATCCTTTAAAAGTAAATGTAAAATATCAAAAAGAACAATATTTGCAAAAAACT 2478 | | ||||| || ||| || ||| || |||||| || || | | | ||| Sbjct 43940 GGTAGTGATACTGTAACAGCAAAAGTTAAATATTGTAATGATGCTGTTATAATGAGAACA 43881 Query 2479 CCTATAATTGTAATGACAAACAAACCTGTATTTCCAAACGATTTAGCTTTTCATGATCGT 2538 ||||| || | || | || || |||||||||||| ||||||||||||| |||| Sbjct 43880 CCTATTATAATTTTGTCTAATAATGATGTATTTCCAAATGATTTAGCTTTTC--GATCTA 43823 Query 2539 GTATGT--ACCTAT 2550 | |||| |||||| Sbjct 43822 GAATGTTCACCTAT 43809 >SEQ19609 Length=132670 Score = 95.1 bits (104), Expect = 4e-16 Identities = 204/300 (68%), Gaps = 10/300 (3%) Strand=Plus/Plus Query 2236 CCTAGTGCTGGTAAAAATTATTTTATAGACGCTATATTGTCCTTTTATTTGAATACTGGA 2295 |||| |||||||||||||| |||| | || || | | || || ||| ||| ||| Sbjct 8152 CCTAATGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTTGG- 8210 Query 2296 ATTATATT--AAACTTTAATAGATTTAGTCAATTTCCACTTATGGAAGCTGTTAATAGAC 2353 | | || ||| |||||||||| | | ||||||| | |||||| |||| ||| || Sbjct 8211 -TCAAGTTGGAAATTTTAATAGATATTGCTCATTTCCATTAATGGAATGTGTTGATAAAC 8269 Query 2354 GTGTAAATGTATGGAATGAACCTAATTTTGAACCTGCAGCTTTAGACACCATAAAAATGT 2413 | ||| | ||||||||||||| || || ||| | ||| || || ||||||||| Sbjct 8270 GAATAATTTTATGGAATGAACCATTATTAGAGCCTTCTGCTACTGAAACATTAAAAATGT 8329 Query 2414 TGTTAGCTGGTGATCCTTTAAAAGTAAATGTAAAATATCAAAAAGA--ACAATAT-TTGC 2470 | || | |||||| || ||| | ||| || || ||| || || ||| || Sbjct 8330 TATTCGGAGGTGATACTGTAACTGCAAAAGTTAAGTATTGTAATGATGCTGTTATAATGA 8389 Query 2471 AAAAAACTCCTATAATTGTAATGACAAACAAACCTGTATTTCCAAACGATTTAGCTTTTC 2530 || | || ||||||| || | ||||| ||| |||||||| ||| ||||||||| Sbjct 8390 GAACACCTATTATAATTTTA---TCTAACAATGATGTTTTTCCAAATGATATAGCTTTTC 8446 >seq9740 Length=7421 Score = 89.7 bits (98), Expect = 2e-14 Identities = 216/321 (67%), Gaps = 6/321 (2%) Strand=Plus/Minus Query 2203 CCTAAACAAAATACCTTTCAAATTATAGGTGAGCCTAGTGCTGGTAAAAATTATTTTATA 2262 || ||| ||||||| | ||| || || || | |||||||||||| |||||| | Sbjct 1652 CCAAAAAAAAATACTATGTTTATTTTAAGTCCACCAAATGCTGGTAAAAACTATTTTTTT 1593 Query 2263 GACGCTATATTGTCCTT-TTATTTGAATACTGGAATTATATTAAACTTTAATAGATTTAG 2321 || ||| | | || || || ||| ||| |||| || || |||||||||| | | Sbjct 1592 GATGCT-TTTATTCATTATTGTTTAAATTTTGGACAAGTAGGTAATTTTAATAGATATTG 1534 Query 2322 TCAATTTCCACTTATGGAAGCTGTTAATAGACGTGTAAATGTATGGAATGAACCTAATTT 2381 | |||||| | |||||| |||| ||||| | | | | |||||||||| || | || Sbjct 1533 CAATTTTCCATTAATGGAATGTGTTGATAGAAGAATTATTTTATGGAATGAGCCAATATT 1474 Query 2382 TGAACCTGCAGCTTTAGACACCATAAAAATGTTGTTAGCTGGTGATCCTTTAAAAGTAAA 2441 ||| | | || ||| || |||||||||| || |||||| || || || || Sbjct 1473 AGAATCATCTGCAACAGAAACTTTAAAAATGTTATTTCGAGGTGATACTGTATCAGCGAA 1414 Query 2442 TGTAAAATATCAAAAAGA-ACA-ATATTTGCAAAAAACTCCTATAATTGTAATGACAAAC 2499 |||||||| || || || || || || |||||| ||||||||| | |||| Sbjct 1413 AATAAAATATTGTAATGATGCAGTTACTT--TAAGAACTCCAATAATTGTATTATCAAAT 1356 Query 2500 AAACCTGTATTTCCAAACGAT 2520 || ||| ||||| || ||| Sbjct 1355 AATGATGTCTTTCCTAATGAT 1335 >seq7769 Length=17201 Score = 89.7 bits (98), Expect = 2e-14 Identities = 216/321 (67%), Gaps = 6/321 (2%) Strand=Plus/Plus Query 2203 CCTAAACAAAATACCTTTCAAATTATAGGTGAGCCTAGTGCTGGTAAAAATTATTTTATA 2262 || ||| ||||||| | ||| || || || | |||||||||||| |||||| | Sbjct 8718 CCAAAAAAAAATACTATGTTTATTTTAAGTCCACCAAATGCTGGTAAAAACTATTTTTTT 8777 Query 2263 GACGCTATATTGTCCTT-TTATTTGAATACTGGAATTATATTAAACTTTAATAGATTTAG 2321 || ||| | | || || || ||| ||| |||| || || |||||||||| | | Sbjct 8778 GATGCT-TTTATTCATTATTGTTTAAATTTTGGACAAGTAGGTAATTTTAATAGATATTG 8836 Query 2322 TCAATTTCCACTTATGGAAGCTGTTAATAGACGTGTAAATGTATGGAATGAACCTAATTT 2381 | |||||| | |||||| |||| ||||| | | | | |||||||||| || | || Sbjct 8837 CAATTTTCCATTAATGGAATGTGTTGATAGAAGAATTATTTTATGGAATGAGCCAATATT 8896 Query 2382 TGAACCTGCAGCTTTAGACACCATAAAAATGTTGTTAGCTGGTGATCCTTTAAAAGTAAA 2441 ||| | | || ||| || |||||||||| || |||||| || || || || Sbjct 8897 AGAATCATCTGCAACAGAAACTTTAAAAATGTTATTTCGAGGTGATACTGTATCAGCGAA 8956 Query 2442 TGTAAAATATCAAAAAGA-ACA-ATATTTGCAAAAAACTCCTATAATTGTAATGACAAAC 2499 |||||||| || || || || || || |||||| ||||||||| | |||| Sbjct 8957 AATAAAATATTGTAATGATGCAGTTACTT--TAAGAACTCCAATAATTGTATTATCAAAT 9014 Query 2500 AAACCTGTATTTCCAAACGAT 2520 || ||| ||||| || ||| Sbjct 9015 AATGATGTCTTTCCTAATGAT 9035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16008396630120