Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_006555.1
Length=5039
Score E
Sequences producing significant alignments: (Bits) Value
SEQ21319 109 2e-20
seq4973 105 2e-19
SEQ21320 100 9e-18
SEQ21318 100 9e-18
SEQ19609 95.1 4e-16
seq9740 89.7 2e-14
seq7769 89.7 2e-14
>SEQ21319
Length=5058
Score = 109 bits (120), Expect = 2e-20
Identities = 215/314 (68%), Gaps = 8/314 (3%)
Strand=Plus/Minus
Query 2241 TGCTGGTAAAAATTATTTTATAGACGCTATATTGTCCTTTTATTTGAATACTGGAATTAT 2300
|||||||||||||| |||| | || || | | || || ||| ||| ||| | |
Sbjct 4172 TGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTTGG--TCAG 4115
Query 2301 ATT--AAACTTTAATAGATTTAGTCAATTTCCACTTATGGAAGCTGTTAATAGACGTGTA 2358
|| ||| |||||||||| | || ||||||| | ||||| |||| ||||| | |
Sbjct 4114 GTTGGAAATTTTAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAGAAGAATT 4055
Query 2359 AATGTATGGAATGAACCTAATTTTGAACCTGCAGCTTTAGACACCATAAAAATGTTGTTA 2418
| | ||||||||||||| || || ||| | ||| | || || |||||||| | ||
Sbjct 4054 ATTTTATGGAATGAACCATTATTAGAGCCTTCTGCTATTGAGACATTAAAAATGCTCTTT 3995
Query 2419 GCTGGTGATCCTTTAAAAGTAAATGTAAAATATCAAAAAGAACAATATTTGCAAAAAACT 2478
| ||||||| || ||| || ||| || |||||| || || | | | |||
Sbjct 3994 GGTGGTGATACTGTAACAGCAAAAGTTAAATATTGTAATGATGCTGTTATAATGAGAACA 3935
Query 2479 CCTATAATTGTAATGACAAACAAACCTGTATTTCCAAACGATTTAGCTTTTCATGATCGT 2538
||||| || | || | || || |||||||||||| ||||||||||||| ||||
Sbjct 3934 CCTATTATAATTTTGTCTAATAATGATGTATTTCCAAATGATTTAGCTTTTC--GATCTA 3877
Query 2539 GTATGT--ACCTAT 2550
| |||| ||||||
Sbjct 3876 GAATGTTCACCTAT 3863
>seq4973
Length=13628
Score = 105 bits (116), Expect = 2e-19
Identities = 214/314 (68%), Gaps = 8/314 (3%)
Strand=Plus/Minus
Query 2241 TGCTGGTAAAAATTATTTTATAGACGCTATATTGTCCTTTTATTTGAATACTGGAATTAT 2300
|||||||||||||| |||| | || || | | || || ||| ||| ||| | |
Sbjct 5893 TGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTTGG--TCAG 5836
Query 2301 ATT--AAACTTTAATAGATTTAGTCAATTTCCACTTATGGAAGCTGTTAATAGACGTGTA 2358
|| ||| |||||||||| | || ||||||| | ||||| |||| ||||| | |
Sbjct 5835 GTTGGAAATTTTAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAGAAGAATT 5776
Query 2359 AATGTATGGAATGAACCTAATTTTGAACCTGCAGCTTTAGACACCATAAAAATGTTGTTA 2418
| | ||||||||||||| || || ||| | ||| | || || |||||||| | ||
Sbjct 5775 ATTTTATGGAATGAACCATTATTAGAGCCTTCTGCTATTGAGACATTAAAAATGCTCTTT 5716
Query 2419 GCTGGTGATCCTTTAAAAGTAAATGTAAAATATCAAAAAGAACAATATTTGCAAAAAACT 2478
| ||||||| || ||| || ||| || |||||| || || | | | |||
Sbjct 5715 GGTGGTGATACTGTAACAGCAAAAGTTAAATATTGTAATGATGCTGTTATAATGAGAACA 5656
Query 2479 CCTATAATTGTAATGACAAACAAACCTGTATTTCCAAACGATTTAGCTTTTCATGATCGT 2538
||||| || | || | || || |||||||||||| ||| ||||||||| ||||
Sbjct 5655 CCTATTATAATTTTGTCTAATAACGATGTATTTCCAAATGATGTAGCTTTTC--GATCTA 5598
Query 2539 GTATGT--ACCTAT 2550
| |||| ||||||
Sbjct 5597 GAATGTTCACCTAT 5584
>SEQ21320
Length=31550
Score = 100 bits (110), Expect = 9e-18
Identities = 213/314 (68%), Gaps = 8/314 (3%)
Strand=Plus/Minus
Query 2241 TGCTGGTAAAAATTATTTTATAGACGCTATATTGTCCTTTTATTTGAATACTGGAATTAT 2300
|||||||||||||| |||| | || || | | || || ||| ||| ||| | |
Sbjct 2834 TGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTTGG--TCAG 2777
Query 2301 ATT--AAACTTTAATAGATTTAGTCAATTTCCACTTATGGAAGCTGTTAATAGACGTGTA 2358
|| ||| |||||||||| | || ||||||| | ||||| |||| ||||| | |
Sbjct 2776 GTTGAAAAATTTAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAGAAGAATG 2717
Query 2359 AATGTATGGAATGAACCTAATTTTGAACCTGCAGCTTTAGACACCATAAAAATGTTGTTA 2418
| | ||||||||||||| || || ||| | ||| || || |||||||| | ||
Sbjct 2716 ATTTTATGGAATGAACCATTATTAGAGCCTTCTGCTACTGAGACATTAAAAATGCTCTTT 2657
Query 2419 GCTGGTGATCCTTTAAAAGTAAATGTAAAATATCAAAAAGAACAATATTTGCAAAAAACT 2478
| | ||||| || ||| || ||| || |||||| || || | | | |||
Sbjct 2656 GGTAGTGATACTGTAACAGCAAAAGTTAAATATTGTAATGATGCTGTTATAATGAGAACA 2597
Query 2479 CCTATAATTGTAATGACAAACAAACCTGTATTTCCAAACGATTTAGCTTTTCATGATCGT 2538
||||| || | || | || || |||||||||||| ||||||||||||| ||||
Sbjct 2596 CCTATTATAATTTTGTCTAATAATGATGTATTTCCAAATGATTTAGCTTTTC--GATCTA 2539
Query 2539 GTATGT--ACCTAT 2550
| |||| ||||||
Sbjct 2538 GAATGTTCACCTAT 2525
>SEQ21318
Length=45390
Score = 100 bits (110), Expect = 9e-18
Identities = 213/314 (68%), Gaps = 8/314 (3%)
Strand=Plus/Minus
Query 2241 TGCTGGTAAAAATTATTTTATAGACGCTATATTGTCCTTTTATTTGAATACTGGAATTAT 2300
|||||||||||||| |||| | || || | | || || ||| ||| ||| | |
Sbjct 44118 TGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTTGG--TCAG 44061
Query 2301 ATT--AAACTTTAATAGATTTAGTCAATTTCCACTTATGGAAGCTGTTAATAGACGTGTA 2358
|| ||| |||||||||| | || ||||||| | ||||| |||| ||||| | |
Sbjct 44060 GTTGAAAAATTTAATAGATATTGTTCATTTCCATTAATGGAGTGTGTTGATAGAAGAATG 44001
Query 2359 AATGTATGGAATGAACCTAATTTTGAACCTGCAGCTTTAGACACCATAAAAATGTTGTTA 2418
| | ||||||||||||| || || ||| | ||| || || |||||||| | ||
Sbjct 44000 ATTTTATGGAATGAACCATTATTAGAGCCTTCTGCTACTGAGACATTAAAAATGCTCTTT 43941
Query 2419 GCTGGTGATCCTTTAAAAGTAAATGTAAAATATCAAAAAGAACAATATTTGCAAAAAACT 2478
| | ||||| || ||| || ||| || |||||| || || | | | |||
Sbjct 43940 GGTAGTGATACTGTAACAGCAAAAGTTAAATATTGTAATGATGCTGTTATAATGAGAACA 43881
Query 2479 CCTATAATTGTAATGACAAACAAACCTGTATTTCCAAACGATTTAGCTTTTCATGATCGT 2538
||||| || | || | || || |||||||||||| ||||||||||||| ||||
Sbjct 43880 CCTATTATAATTTTGTCTAATAATGATGTATTTCCAAATGATTTAGCTTTTC--GATCTA 43823
Query 2539 GTATGT--ACCTAT 2550
| |||| ||||||
Sbjct 43822 GAATGTTCACCTAT 43809
>SEQ19609
Length=132670
Score = 95.1 bits (104), Expect = 4e-16
Identities = 204/300 (68%), Gaps = 10/300 (3%)
Strand=Plus/Plus
Query 2236 CCTAGTGCTGGTAAAAATTATTTTATAGACGCTATATTGTCCTTTTATTTGAATACTGGA 2295
|||| |||||||||||||| |||| | || || | | || || ||| ||| |||
Sbjct 8152 CCTAATGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGTTTAAATTTTGG- 8210
Query 2296 ATTATATT--AAACTTTAATAGATTTAGTCAATTTCCACTTATGGAAGCTGTTAATAGAC 2353
| | || ||| |||||||||| | | ||||||| | |||||| |||| ||| ||
Sbjct 8211 -TCAAGTTGGAAATTTTAATAGATATTGCTCATTTCCATTAATGGAATGTGTTGATAAAC 8269
Query 2354 GTGTAAATGTATGGAATGAACCTAATTTTGAACCTGCAGCTTTAGACACCATAAAAATGT 2413
| ||| | ||||||||||||| || || ||| | ||| || || |||||||||
Sbjct 8270 GAATAATTTTATGGAATGAACCATTATTAGAGCCTTCTGCTACTGAAACATTAAAAATGT 8329
Query 2414 TGTTAGCTGGTGATCCTTTAAAAGTAAATGTAAAATATCAAAAAGA--ACAATAT-TTGC 2470
| || | |||||| || ||| | ||| || || ||| || || ||| ||
Sbjct 8330 TATTCGGAGGTGATACTGTAACTGCAAAAGTTAAGTATTGTAATGATGCTGTTATAATGA 8389
Query 2471 AAAAAACTCCTATAATTGTAATGACAAACAAACCTGTATTTCCAAACGATTTAGCTTTTC 2530
|| | || ||||||| || | ||||| ||| |||||||| ||| |||||||||
Sbjct 8390 GAACACCTATTATAATTTTA---TCTAACAATGATGTTTTTCCAAATGATATAGCTTTTC 8446
>seq9740
Length=7421
Score = 89.7 bits (98), Expect = 2e-14
Identities = 216/321 (67%), Gaps = 6/321 (2%)
Strand=Plus/Minus
Query 2203 CCTAAACAAAATACCTTTCAAATTATAGGTGAGCCTAGTGCTGGTAAAAATTATTTTATA 2262
|| ||| ||||||| | ||| || || || | |||||||||||| |||||| |
Sbjct 1652 CCAAAAAAAAATACTATGTTTATTTTAAGTCCACCAAATGCTGGTAAAAACTATTTTTTT 1593
Query 2263 GACGCTATATTGTCCTT-TTATTTGAATACTGGAATTATATTAAACTTTAATAGATTTAG 2321
|| ||| | | || || || ||| ||| |||| || || |||||||||| | |
Sbjct 1592 GATGCT-TTTATTCATTATTGTTTAAATTTTGGACAAGTAGGTAATTTTAATAGATATTG 1534
Query 2322 TCAATTTCCACTTATGGAAGCTGTTAATAGACGTGTAAATGTATGGAATGAACCTAATTT 2381
| |||||| | |||||| |||| ||||| | | | | |||||||||| || | ||
Sbjct 1533 CAATTTTCCATTAATGGAATGTGTTGATAGAAGAATTATTTTATGGAATGAGCCAATATT 1474
Query 2382 TGAACCTGCAGCTTTAGACACCATAAAAATGTTGTTAGCTGGTGATCCTTTAAAAGTAAA 2441
||| | | || ||| || |||||||||| || |||||| || || || ||
Sbjct 1473 AGAATCATCTGCAACAGAAACTTTAAAAATGTTATTTCGAGGTGATACTGTATCAGCGAA 1414
Query 2442 TGTAAAATATCAAAAAGA-ACA-ATATTTGCAAAAAACTCCTATAATTGTAATGACAAAC 2499
|||||||| || || || || || || |||||| ||||||||| | ||||
Sbjct 1413 AATAAAATATTGTAATGATGCAGTTACTT--TAAGAACTCCAATAATTGTATTATCAAAT 1356
Query 2500 AAACCTGTATTTCCAAACGAT 2520
|| ||| ||||| || |||
Sbjct 1355 AATGATGTCTTTCCTAATGAT 1335
>seq7769
Length=17201
Score = 89.7 bits (98), Expect = 2e-14
Identities = 216/321 (67%), Gaps = 6/321 (2%)
Strand=Plus/Plus
Query 2203 CCTAAACAAAATACCTTTCAAATTATAGGTGAGCCTAGTGCTGGTAAAAATTATTTTATA 2262
|| ||| ||||||| | ||| || || || | |||||||||||| |||||| |
Sbjct 8718 CCAAAAAAAAATACTATGTTTATTTTAAGTCCACCAAATGCTGGTAAAAACTATTTTTTT 8777
Query 2263 GACGCTATATTGTCCTT-TTATTTGAATACTGGAATTATATTAAACTTTAATAGATTTAG 2321
|| ||| | | || || || ||| ||| |||| || || |||||||||| | |
Sbjct 8778 GATGCT-TTTATTCATTATTGTTTAAATTTTGGACAAGTAGGTAATTTTAATAGATATTG 8836
Query 2322 TCAATTTCCACTTATGGAAGCTGTTAATAGACGTGTAAATGTATGGAATGAACCTAATTT 2381
| |||||| | |||||| |||| ||||| | | | | |||||||||| || | ||
Sbjct 8837 CAATTTTCCATTAATGGAATGTGTTGATAGAAGAATTATTTTATGGAATGAGCCAATATT 8896
Query 2382 TGAACCTGCAGCTTTAGACACCATAAAAATGTTGTTAGCTGGTGATCCTTTAAAAGTAAA 2441
||| | | || ||| || |||||||||| || |||||| || || || ||
Sbjct 8897 AGAATCATCTGCAACAGAAACTTTAAAAATGTTATTTCGAGGTGATACTGTATCAGCGAA 8956
Query 2442 TGTAAAATATCAAAAAGA-ACA-ATATTTGCAAAAAACTCCTATAATTGTAATGACAAAC 2499
|||||||| || || || || || || |||||| ||||||||| | ||||
Sbjct 8957 AATAAAATATTGTAATGATGCAGTTACTT--TAAGAACTCCAATAATTGTATTATCAAAT 9014
Query 2500 AAACCTGTATTTCCAAACGAT 2520
|| ||| ||||| || |||
Sbjct 9015 AATGATGTCTTTCCTAATGAT 9035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16008396630120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |