Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_012685.1 Length=5759 Score E Sequences producing significant alignments: (Bits) Value SEQ19609 82.4 3e-12 seq5851 80.6 1e-11 >SEQ19609 Length=132670 Score = 82.4 bits (90), Expect = 3e-12 Identities = 226/342 (66%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 2220 GAAGACTTTTTAAAATTTCAATTTGAGGATAACGACGAAAAAATCACTCAATTTTTAGTA 2279 || || || |||||||| |||||| | ||||| || | ||||| | |||||||| Sbjct 8029 GATGAATTGTTAAAATTCCAATTTTATGATAATGATCATAAAATTTCAAAATTTTTAAAT 8088 Query 2280 GATTTAATTGATGTACTTGATAAACGAGTTCCAAAACAAAATGCTTTTGCAGTAATTTCG 2339 |||| | || || | |||||| |||||||| ||||| || | || | || Sbjct 8089 AATTTGTATAATATAATAGATAAAAATATTCCAAAAAAAAATACTATATTTATATTATCA 8148 Query 2340 CCACCTAGTTCAGGCAAAAATTTTTTCTTTGACATGATTATGGCAAT-TTGTTTAAACTA 2398 ||||||| | | || ||||||||||| ||||| | |||| || | ||||||||| | Sbjct 8149 CCACCTAATGCTGGTAAAAATTTTTTTTTTGATACTTTTAT-TCACTATTGTTTAAATTT 8207 Query 2399 TGGACAATTAGGACAAGCAAACAGACATAATTTGTTTGCATTTCAAGAAGCTCCCAATAA 2458 ||| ||| | ||| | || ||| || | ||| |||| ||| | |||| Sbjct 8208 TGGTCAAGTTGGAAATTTTAATAGATATTGCTCATTTCCATTAATGGAATGTGTTGATAA 8267 Query 2459 AAGATTATTACTTTGGAATGAACCAAACTATGAAAGCGCAATG--ACAGATACAATAAAA 2516 | || || | | ||||||||||| | ||| | ||| || || || ||| ||||| Sbjct 8268 ACGAATAATTTTATGGAATGAACC--ATTATTAGAGCCTTCTGCTACTGAAACATTAAAA 8325 Query 2517 ATGATGATGGGCGGAGATCCATATACTGTAAGAGTAAAATAT 2558 ||| | | || || ||| | |||| || ||| || ||| Sbjct 8326 ATGTTATTCGGAGGTGATACTGTAACTGCAAAAGTTAAGTAT 8367 >seq5851 Length=40579 Score = 80.6 bits (88), Expect = 1e-11 Identities = 137/195 (70%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 2202 GAATCGTTTGCTATATTAGAAGACTTTTTAAAATTTCAATTTGAGGATAACGACGAAAAA 2261 ||||| || ||| ||||| || || ||||||||||||||| | |||||||| || || Sbjct 28685 GAATCTATTAATATTTTAGATGAATTATTAAAATTTCAATTTTATGATAACGATGATCAA 28626 Query 2262 ATCACTCAATTTTTAGTAGATTTAATTGATGTACTTGATAAACGAGTTCCAAAACAAAAT 2321 || || |||||| | | ||| | | || | |||||||| | |||| || ||||| Sbjct 28625 ATATCTTAATTTTCAAAAAATTGATATAATATTATTGATAAAAGTATTCCTAAGAAAAAT 28566 Query 2322 GCTTTTGCAGTAATTTCGCCACCTAGTTCAGGCAAAAATTTTTTCTTTGACATGATTATG 2381 || | || | || ||||| | | | || ||||| ||||| ||||| | |||| Sbjct 28565 ACTATGTTTATATTATCTCCACCAAATGCTGGAAAAAAATTTTT-TTTGATACATTTAT- 28508 Query 2382 GCAATT-TGTTTAAA 2395 || || |||||||| Sbjct 28507 ACATTTCTGTTTAAA 28493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18311763051720