Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_019492.1 Length=5990 Score E Sequences producing significant alignments: (Bits) Value SEQ19609 114 5e-22 SEQ21320 86.0 2e-13 SEQ21319 86.0 2e-13 SEQ21318 86.0 2e-13 seq4973 86.0 2e-13 >SEQ19609 Length=132670 Score = 114 bits (126), Expect = 5e-22 Identities = 352/537 (66%), Gaps = 13/537 (2%) Strand=Plus/Plus Query 2451 TTATTGTTGAATTACTAAAATATCAATGTAATGATGATGAAGATTTAATTGTAGAATTTC 2510 || ||| |||||| |||||| |||| | ||||| |||| || |||| | ||||| Sbjct 8024 TTCTTGATGAATTGTTAAAATTCCAATTTTATGATAATGATCATAAAATTTCAAAATTTT 8083 Query 2511 TTACTAACTTGGTTAATGTTTTAGATCGTCGTATTCCCAAATTAAATGCTTTTCTTATTT 2570 | | ||| ||| |||| | ||||| |||||| ||| |||| || | |||| | Sbjct 8084 TAAATAATTTGTATAATATAATAGATAAAAATATTCCAAAAAAAAATACTATATTTATAT 8143 Query 2571 TGTCTCCTCCAAGTGCTGGTAAAAATTTCTTTTTTGATATGATTTTT--GGATTGTTATT 2628 | || || || | ||||||||||||||| |||||||||| || || ||||| || Sbjct 8144 TATCACCACCTAATGCTGGTAAAAATTTTTTTTTTGATACTTTTATTCACTATTGT--TT 8201 Query 2629 ATCTTATGGACAGTTAGGTCAAGCTAATAGACATAACTTGTTTGCTTTTCAAGAAGCACC 2688 | || ||| || | || | ||||||| || || ||| | || ||| Sbjct 8202 AAATTTTGGTCAAGTTGGAAATTTTAATAGATATTGCTCATTTCCATTAATGGAATGTGT 8261 Query 2689 TAATAAACGTGTGTTATTGTGGAATGAACCTAATTATGAAAG--TTCGTTAACAGACACA 2746 | ||||||| | | || ||||||||||| ||||| | || ||| || || ||| Sbjct 8262 TGATAAACGAATAATTTTATGGAATGAACC--ATTATTAGAGCCTTCTGCTACTGAAACA 8319 Query 2747 ATTAAAATGATGTTTGGAGGAGACCCTTACACTGTTAGAGTTAAGAATCGTATGGATGCA 2806 | |||||| | || ||||| || || |||| | ||||||| || ||| ||||| Sbjct 8320 TTAAAAATGTTATTCGGAGGTGATACTGTAACTGCAAAAGTTAAGTATTGTAATGATGCT 8379 Query 2807 CATGTAAAACGCACTCCAGTTATTATACTAACTAACAATACTGTACCTTTTATGTATGAA 2866 | ||| | || || |||| || || |||||||| ||| |||| |||| Sbjct 8380 GTTATAATGAGAACACCTATTATAATTTTATCTAACAATGATGT---TTTTCCAAATGAT 8436 Query 2867 ACTGCTTTTAGTGATAGAATTATTCAATATAAATGG-GATGCTGCGCCATTCCTGAAGGA 2925 | |||||| | |||||| || ||||||||| ||| || | | || || Sbjct 8437 ATAGCTTTTCGGTCTAGAATGTTTACCTATAAATGGAGATCATG-TTTAAAATTAAAAGA 8495 Query 2926 TTATGAATTGAAACCACATCCAATGACATTTTTCCTTTTATTGAGTAAATACAATAT 2982 |||| || ||||||||||| | | | || | |||||| | ||||| ||||| Sbjct 8496 TTATAAAAAAAAACCACATCCTTTATCTTGTTATCATTTATTAAAAAAATATAATAT 8552 >SEQ21320 Length=31550 Score = 86.0 bits (94), Expect = 2e-13 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2450 ATTATTGTTGAATTACTAAAATATCAATGTAATGATGATGAAGATTTAATTGTAGAATTT 2509 ||| ||| |||||| |||||| |||| | ||||| |||| || ||| | ||||| Sbjct 2968 ATTCTTGATGAATTGTTAAAATTCCAATTTTATGATAATGATCATCAAATATCAAAATTT 2909 Query 2510 CTTACTAACTTGGTTAATGTTTTAGATCGTCGTATTCCCAAATTAAATGCTTTTCTTATT 2569 | | ||| ||| |||| | | ||| |||||| ||| |||| || | |||| Sbjct 2908 TTAAATAATTTGTATAATATAATTGATAAAAATATTCCAAAAAAAAATACTATATTTATA 2849 Query 2570 TTGTCTCCTCCAAGTGCTGGTAAAAATTTCTTTTTTGATA 2609 || || || |||| ||||||||||||||| |||||||||| Sbjct 2848 TTATCACCACCAAATGCTGGTAAAAATTTTTTTTTTGATA 2809 >SEQ21319 Length=5058 Score = 86.0 bits (94), Expect = 2e-13 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2450 ATTATTGTTGAATTACTAAAATATCAATGTAATGATGATGAAGATTTAATTGTAGAATTT 2509 ||| ||| |||||| |||||| |||| | ||||| |||| || ||| | ||||| Sbjct 4306 ATTCTTGATGAATTGTTAAAATTCCAATTTTATGATAATGATCATCAAATATCAAAATTT 4247 Query 2510 CTTACTAACTTGGTTAATGTTTTAGATCGTCGTATTCCCAAATTAAATGCTTTTCTTATT 2569 | | ||| ||| |||| | | ||| |||||| ||| |||| || | |||| Sbjct 4246 TTAAATAATTTGTATAATATAATTGATAAAAATATTCCAAAAAAAAATACTATATTTATA 4187 Query 2570 TTGTCTCCTCCAAGTGCTGGTAAAAATTTCTTTTTTGATA 2609 || || || |||| ||||||||||||||| |||||||||| Sbjct 4186 TTATCACCACCAAATGCTGGTAAAAATTTTTTTTTTGATA 4147 >SEQ21318 Length=45390 Score = 86.0 bits (94), Expect = 2e-13 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2450 ATTATTGTTGAATTACTAAAATATCAATGTAATGATGATGAAGATTTAATTGTAGAATTT 2509 ||| ||| |||||| |||||| |||| | ||||| |||| || ||| | ||||| Sbjct 44252 ATTCTTGATGAATTGTTAAAATTCCAATTTTATGATAATGATCATCAAATATCAAAATTT 44193 Query 2510 CTTACTAACTTGGTTAATGTTTTAGATCGTCGTATTCCCAAATTAAATGCTTTTCTTATT 2569 | | ||| ||| |||| | | ||| |||||| ||| |||| || | |||| Sbjct 44192 TTAAATAATTTGTATAATATAATTGATAAAAATATTCCAAAAAAAAATACTATATTTATA 44133 Query 2570 TTGTCTCCTCCAAGTGCTGGTAAAAATTTCTTTTTTGATA 2609 || || || |||| ||||||||||||||| |||||||||| Sbjct 44132 TTATCACCACCAAATGCTGGTAAAAATTTTTTTTTTGATA 44093 >seq4973 Length=13628 Score = 86.0 bits (94), Expect = 2e-13 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2450 ATTATTGTTGAATTACTAAAATATCAATGTAATGATGATGAAGATTTAATTGTAGAATTT 2509 ||| ||| |||||| |||||| |||| | ||||| |||| || ||| | ||||| Sbjct 6027 ATTCTTGATGAATTGTTAAAATTCCAATTTTATGATAATGATCATCAAATATCAAAATTT 5968 Query 2510 CTTACTAACTTGGTTAATGTTTTAGATCGTCGTATTCCCAAATTAAATGCTTTTCTTATT 2569 | | ||| ||| |||| | | ||| |||||| ||| |||| || | |||| Sbjct 5967 TTAAATAATTTGTATAATATAATTGATAAAAATATTCCAAAAAAAAATACTATATTTATA 5908 Query 2570 TTGTCTCCTCCAAGTGCTGGTAAAAATTTCTTTTTTGATA 2609 || || || |||| ||||||||||||||| |||||||||| Sbjct 5907 TTATCACCACCAAATGCTGGTAAAAATTTTTTTTTTGATA 5868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19050759778650