Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_030296.1 Length=5071 Score E Sequences producing significant alignments: (Bits) Value seq5851 100 9e-18 SEQ19609 98.7 3e-17 SEQ21319 86.0 2e-13 seq4973 86.0 2e-13 seq9740 82.4 2e-12 seq7769 82.4 2e-12 SEQ24276 78.8 3e-11 >seq5851 Length=40579 Score = 100 bits (110), Expect = 9e-18 Identities = 165/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 1913 GAAAAACGTATAGCTaaaaaaaaTACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAA 1972 || ||| |||| |||| |||||||| | ||| | | || ||| | |||||||| ||| Sbjct 28589 GATAAAAGTATTCCTAAGAAAAATACTATGTTTATATTATCTCCACCAAATGCTGGAAAA 28530 Query 1973 AATTTTTTCTTCGATTGCATTGTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTT 2032 || ||||| || ||| || ||||||| | ||| ||||||||| |||| |||||| Sbjct 28529 AAATTTTTTTT-GATACATTTATACATTTCTGTTTAAATTTCGGTGAAGTCGGAAATTTT 28471 Query 2033 AATAAGTACCAAAATTTCCCTTTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAAC 2092 ||||| || ||| || ||| || |||||| | |||||||| | | ||||| Sbjct 28470 AATAAATATTGTTCTTTTCCATTAATGGAATGTGTTGAAAAACGTATAATATTATGGAAT 28411 Query 2093 GAACCACAAGCTGAGCCTAGTGCTTTTGAAACTCTGAAAACGTTACTCGGAGGCGAT 2149 |||||| | || ||| |||| ||||| || |||| | | | ||||| ||| Sbjct 28410 GAACCATTATTGGAACCTTCTGCTACGGAAACACTAAAAATGCTTTTTGGAGGTGAT 28354 >SEQ19609 Length=132670 Score = 98.7 bits (108), Expect = 3e-17 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 1928 aaaaaaaaTACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAAAATTTTTTCTTCGAT 1987 ||||||||||| | ||| | | || ||| | |||||||| ||||||||||| || ||| Sbjct 8122 AAAAAAAATACTATATTTATATTATCACCACCTAATGCTGGTAAAAATTTTTTTTTTGAT 8181 Query 1988 TGCATTGTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTTAATAAGTACCAAAAT 2047 || | || | || ||| ||||| |||| | || |||||||||| || Sbjct 8182 ACTTTTATTCACTATTGTTTAAATTTTGGTCAAGTTGGAAATTTTAATAGATATTGCTCA 8241 Query 2048 TTCCCTTTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAACGAACCACAAGCTGAG 2107 || || ||| || |||||| | ||||| || || | ||||| |||||| | ||| Sbjct 8242 TTTCCATTAATGGAATGTGTTGATAAACGAATAATTTTATGGAATGAACCATTATTAGAG 8301 Query 2108 CCTAGTGCTTTTGAAACTCTGAAAACGTTACTCGGAGGCGAT 2149 ||| |||| |||||| | |||| |||| ||||||| ||| Sbjct 8302 CCTTCTGCTACTGAAACATTAAAAATGTTATTCGGAGGTGAT 8343 >SEQ21319 Length=5058 Score = 86.0 bits (94), Expect = 2e-13 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 1928 aaaaaaaaTACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAAAATTTTTTCTTCGAT 1987 ||||||||||| | ||| | | || ||| | |||||||| ||||||||||| || ||| Sbjct 4207 AAAAAAAATACTATATTTATATTATCACCACCAAATGCTGGTAAAAATTTTTTTTTTGAT 4148 Query 1988 TGCATTGTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTTAATAAGTACCAAAAT 2047 || | || | || ||| ||||| |||| | | || |||||||||| || Sbjct 4147 ACTTTTATTCACTATTGTTTAAATTTTGGTCAGGTTGGAAATTTTAATAGATATTGTTCA 4088 Query 2048 TTCCCTTTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAACGAACCACAAGCTGAG 2107 || || ||| ||||||||| | | | | ||| || | ||||| |||||| | ||| Sbjct 4087 TTTCCATTAATGGAGTGTGTTGATAGAAGAATTATTTTATGGAATGAACCATTATTAGAG 4028 Query 2108 CCTAGTGCTTTTGAAACTCTGAAAA 2132 ||| |||| |||| || | |||| Sbjct 4027 CCTTCTGCTATTGAGACATTAAAAA 4003 >seq4973 Length=13628 Score = 86.0 bits (94), Expect = 2e-13 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 1928 aaaaaaaaTACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAAAATTTTTTCTTCGAT 1987 ||||||||||| | ||| | | || ||| | |||||||| ||||||||||| || ||| Sbjct 5928 AAAAAAAATACTATATTTATATTATCACCACCAAATGCTGGTAAAAATTTTTTTTTTGAT 5869 Query 1988 TGCATTGTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTTAATAAGTACCAAAAT 2047 || | || | || ||| ||||| |||| | | || |||||||||| || Sbjct 5868 ACTTTTATTCACTATTGTTTAAATTTTGGTCAGGTTGGAAATTTTAATAGATATTGTTCA 5809 Query 2048 TTCCCTTTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAACGAACCACAAGCTGAG 2107 || || ||| ||||||||| | | | | ||| || | ||||| |||||| | ||| Sbjct 5808 TTTCCATTAATGGAGTGTGTTGATAGAAGAATTATTTTATGGAATGAACCATTATTAGAG 5749 Query 2108 CCTAGTGCTTTTGAAACTCTGAAAA 2132 ||| |||| |||| || | |||| Sbjct 5748 CCTTCTGCTATTGAGACATTAAAAA 5724 >seq9740 Length=7421 Score = 82.4 bits (90), Expect = 2e-12 Identities = 191/285 (67%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 1817 GAGTCCGTTGTAATTTTGGAAAAATTGCTACTCTATCAGTATCGTGATGATACGGAA--- 1873 || ||||||| | |||| ||||| || || | ||| | | | || ||| |||| Sbjct 1760 GAATCCGTTGAAGTTTTAGAAAATTTATTAAAATTTCAATTTTATAATAATATGGAAGAA 1701 Query 1874 ATTGTGGAAATTTTTCTCCAGGATCTATATGACGTACTCGAAAAACGTATAGCTaaaaaa 1933 |||| |||||||| || || ||||| ||| | || ||| ||| | |||||| Sbjct 1700 ATTGAA-AAATTTTTAAACA--ATTTATATTGTGTAATTGATAAAATAATACCAAAAAAA 1644 Query 1934 aaTACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAAAATTTTTTCTTCGATTGCATT 1993 ||||| | ||| || | ||| | |||||||| ||||| | ||| || ||| || Sbjct 1643 AATACTATGTTTATTTTAAGTCCACCAAATGCTGGTAAAAACTATTTTTTTGATGCTTTT 1584 Query 1994 GTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTTAATAAGTACCAAAATTTCCCT 2053 | |||| || ||| ||||| || | | ||||||||||||| || ||||| || Sbjct 1583 ATTCATTATTGTTTAAATTTTGGACAAGTAGGTAATTTTAATAGATATTGCAATTTTCCA 1524 Query 2054 TTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAACGAACCA 2098 ||| || |||||| | | | | ||| || | ||||| || ||| Sbjct 1523 TTAATGGAATGTGTTGATAGAAGAATTATTTTATGGAATGAGCCA 1479 >seq7769 Length=17201 Score = 82.4 bits (90), Expect = 2e-12 Identities = 191/285 (67%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 1817 GAGTCCGTTGTAATTTTGGAAAAATTGCTACTCTATCAGTATCGTGATGATACGGAA--- 1873 || ||||||| | |||| ||||| || || | ||| | | | || ||| |||| Sbjct 8610 GAATCCGTTGAAGTTTTAGAAAATTTATTAAAATTTCAATTTTATAATAATATGGAAGAA 8669 Query 1874 ATTGTGGAAATTTTTCTCCAGGATCTATATGACGTACTCGAAAAACGTATAGCTaaaaaa 1933 |||| |||||||| || || ||||| ||| | || ||| ||| | |||||| Sbjct 8670 ATTGAA-AAATTTTTAAACA--ATTTATATTGTGTAATTGATAAAATAATACCAAAAAAA 8726 Query 1934 aaTACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAAAATTTTTTCTTCGATTGCATT 1993 ||||| | ||| || | ||| | |||||||| ||||| | ||| || ||| || Sbjct 8727 AATACTATGTTTATTTTAAGTCCACCAAATGCTGGTAAAAACTATTTTTTTGATGCTTTT 8786 Query 1994 GTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTTAATAAGTACCAAAATTTCCCT 2053 | |||| || ||| ||||| || | | ||||||||||||| || ||||| || Sbjct 8787 ATTCATTATTGTTTAAATTTTGGACAAGTAGGTAATTTTAATAGATATTGCAATTTTCCA 8846 Query 2054 TTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAACGAACCA 2098 ||| || |||||| | | | | ||| || | ||||| || ||| Sbjct 8847 TTAATGGAATGTGTTGATAGAAGAATTATTTTATGGAATGAGCCA 8891 >SEQ24276 Length=80156 Score = 78.8 bits (86), Expect = 3e-11 Identities = 222/337 (66%), Gaps = 7/337 (2%) Strand=Plus/Minus Query 1817 GAGTCCGTTGTAATTTTGGAAAAATTGCTACTCTATCAGTATCGTGATGATACGGAA--- 1873 || ||||||| | |||| ||||| || || | ||| | | | || ||| |||| Sbjct 6366 GAATCCGTTGAAGTTTTAGAAAATTTATTAAAATTTCAATTTTATAATAATATGGAAGAA 6307 Query 1874 ATTGTGGAAATTTTTCTCCAGGATCTATATGACGTACTCGAAAAACGTATAGCTaaaaaa 1933 |||| |||||||| || || ||||| ||| | || ||| ||| | |||||| Sbjct 6306 ATTGAA-AAATTTTTAAACA--ATTTATATTGTGTAATTGATAAAATAATATCAAAAAAA 6250 Query 1934 aa-TACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAAAATTTTTTCTTCGATTGCAT 1992 || ||| | ||| || | ||| | |||||||| ||||| | ||| || ||| | Sbjct 6249 AAATACTATGTTTATTTTAAGTCCAGCAAATGCTGGTAAAAACTATTTTTTTGATGCTTT 6190 Query 1993 TGTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTTAATAAGTACCAAAATTTCCC 2052 | | |||| || ||| ||||| || | | ||||||||||||| || ||||| || Sbjct 6189 TATTCATTATTGTTTAAATTTTGGACAAGTAGGTAATTTTAATAGATATTGCAATTTTCC 6130 Query 2053 TTTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAACGAACCACAAGCTGAGCCTAG 2112 ||| || |||||| | | | | ||| || | ||||| || ||| | || | Sbjct 6129 ATTAATGGAATGTGTTGATAGAAGAATTATTTTATGGAATGAGCCAATATTAGAATCATC 6070 Query 2113 TGCTTTTGAAACTCTGAAAACGTTACTCGGAGGCGAT 2149 ||| |||||| | |||| |||| | ||||| ||| Sbjct 6069 TGCAACAGAAACTTTAAAAATGTTATTTGGAGGTGAT 6033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16110768471080