Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_030296.1
Length=5071
Score E
Sequences producing significant alignments: (Bits) Value
seq5851 100 9e-18
SEQ19609 98.7 3e-17
SEQ21319 86.0 2e-13
seq4973 86.0 2e-13
seq9740 82.4 2e-12
seq7769 82.4 2e-12
SEQ24276 78.8 3e-11
>seq5851
Length=40579
Score = 100 bits (110), Expect = 9e-18
Identities = 165/237 (70%), Gaps = 1/237 (0%)
Strand=Plus/Minus
Query 1913 GAAAAACGTATAGCTaaaaaaaaTACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAA 1972
|| ||| |||| |||| |||||||| | ||| | | || ||| | |||||||| |||
Sbjct 28589 GATAAAAGTATTCCTAAGAAAAATACTATGTTTATATTATCTCCACCAAATGCTGGAAAA 28530
Query 1973 AATTTTTTCTTCGATTGCATTGTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTT 2032
|| ||||| || ||| || ||||||| | ||| ||||||||| |||| ||||||
Sbjct 28529 AAATTTTTTTT-GATACATTTATACATTTCTGTTTAAATTTCGGTGAAGTCGGAAATTTT 28471
Query 2033 AATAAGTACCAAAATTTCCCTTTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAAC 2092
||||| || ||| || ||| || |||||| | |||||||| | | |||||
Sbjct 28470 AATAAATATTGTTCTTTTCCATTAATGGAATGTGTTGAAAAACGTATAATATTATGGAAT 28411
Query 2093 GAACCACAAGCTGAGCCTAGTGCTTTTGAAACTCTGAAAACGTTACTCGGAGGCGAT 2149
|||||| | || ||| |||| ||||| || |||| | | | ||||| |||
Sbjct 28410 GAACCATTATTGGAACCTTCTGCTACGGAAACACTAAAAATGCTTTTTGGAGGTGAT 28354
>SEQ19609
Length=132670
Score = 98.7 bits (108), Expect = 3e-17
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 1928 aaaaaaaaTACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAAAATTTTTTCTTCGAT 1987
||||||||||| | ||| | | || ||| | |||||||| ||||||||||| || |||
Sbjct 8122 AAAAAAAATACTATATTTATATTATCACCACCTAATGCTGGTAAAAATTTTTTTTTTGAT 8181
Query 1988 TGCATTGTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTTAATAAGTACCAAAAT 2047
|| | || | || ||| ||||| |||| | || |||||||||| ||
Sbjct 8182 ACTTTTATTCACTATTGTTTAAATTTTGGTCAAGTTGGAAATTTTAATAGATATTGCTCA 8241
Query 2048 TTCCCTTTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAACGAACCACAAGCTGAG 2107
|| || ||| || |||||| | ||||| || || | ||||| |||||| | |||
Sbjct 8242 TTTCCATTAATGGAATGTGTTGATAAACGAATAATTTTATGGAATGAACCATTATTAGAG 8301
Query 2108 CCTAGTGCTTTTGAAACTCTGAAAACGTTACTCGGAGGCGAT 2149
||| |||| |||||| | |||| |||| ||||||| |||
Sbjct 8302 CCTTCTGCTACTGAAACATTAAAAATGTTATTCGGAGGTGAT 8343
>SEQ21319
Length=5058
Score = 86.0 bits (94), Expect = 2e-13
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 1928 aaaaaaaaTACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAAAATTTTTTCTTCGAT 1987
||||||||||| | ||| | | || ||| | |||||||| ||||||||||| || |||
Sbjct 4207 AAAAAAAATACTATATTTATATTATCACCACCAAATGCTGGTAAAAATTTTTTTTTTGAT 4148
Query 1988 TGCATTGTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTTAATAAGTACCAAAAT 2047
|| | || | || ||| ||||| |||| | | || |||||||||| ||
Sbjct 4147 ACTTTTATTCACTATTGTTTAAATTTTGGTCAGGTTGGAAATTTTAATAGATATTGTTCA 4088
Query 2048 TTCCCTTTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAACGAACCACAAGCTGAG 2107
|| || ||| ||||||||| | | | | ||| || | ||||| |||||| | |||
Sbjct 4087 TTTCCATTAATGGAGTGTGTTGATAGAAGAATTATTTTATGGAATGAACCATTATTAGAG 4028
Query 2108 CCTAGTGCTTTTGAAACTCTGAAAA 2132
||| |||| |||| || | ||||
Sbjct 4027 CCTTCTGCTATTGAGACATTAAAAA 4003
>seq4973
Length=13628
Score = 86.0 bits (94), Expect = 2e-13
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 1928 aaaaaaaaTACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAAAATTTTTTCTTCGAT 1987
||||||||||| | ||| | | || ||| | |||||||| ||||||||||| || |||
Sbjct 5928 AAAAAAAATACTATATTTATATTATCACCACCAAATGCTGGTAAAAATTTTTTTTTTGAT 5869
Query 1988 TGCATTGTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTTAATAAGTACCAAAAT 2047
|| | || | || ||| ||||| |||| | | || |||||||||| ||
Sbjct 5868 ACTTTTATTCACTATTGTTTAAATTTTGGTCAGGTTGGAAATTTTAATAGATATTGTTCA 5809
Query 2048 TTCCCTTTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAACGAACCACAAGCTGAG 2107
|| || ||| ||||||||| | | | | ||| || | ||||| |||||| | |||
Sbjct 5808 TTTCCATTAATGGAGTGTGTTGATAGAAGAATTATTTTATGGAATGAACCATTATTAGAG 5749
Query 2108 CCTAGTGCTTTTGAAACTCTGAAAA 2132
||| |||| |||| || | ||||
Sbjct 5748 CCTTCTGCTATTGAGACATTAAAAA 5724
>seq9740
Length=7421
Score = 82.4 bits (90), Expect = 2e-12
Identities = 191/285 (67%), Gaps = 6/285 (2%)
Strand=Plus/Minus
Query 1817 GAGTCCGTTGTAATTTTGGAAAAATTGCTACTCTATCAGTATCGTGATGATACGGAA--- 1873
|| ||||||| | |||| ||||| || || | ||| | | | || ||| ||||
Sbjct 1760 GAATCCGTTGAAGTTTTAGAAAATTTATTAAAATTTCAATTTTATAATAATATGGAAGAA 1701
Query 1874 ATTGTGGAAATTTTTCTCCAGGATCTATATGACGTACTCGAAAAACGTATAGCTaaaaaa 1933
|||| |||||||| || || ||||| ||| | || ||| ||| | ||||||
Sbjct 1700 ATTGAA-AAATTTTTAAACA--ATTTATATTGTGTAATTGATAAAATAATACCAAAAAAA 1644
Query 1934 aaTACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAAAATTTTTTCTTCGATTGCATT 1993
||||| | ||| || | ||| | |||||||| ||||| | ||| || ||| ||
Sbjct 1643 AATACTATGTTTATTTTAAGTCCACCAAATGCTGGTAAAAACTATTTTTTTGATGCTTTT 1584
Query 1994 GTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTTAATAAGTACCAAAATTTCCCT 2053
| |||| || ||| ||||| || | | ||||||||||||| || ||||| ||
Sbjct 1583 ATTCATTATTGTTTAAATTTTGGACAAGTAGGTAATTTTAATAGATATTGCAATTTTCCA 1524
Query 2054 TTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAACGAACCA 2098
||| || |||||| | | | | ||| || | ||||| || |||
Sbjct 1523 TTAATGGAATGTGTTGATAGAAGAATTATTTTATGGAATGAGCCA 1479
>seq7769
Length=17201
Score = 82.4 bits (90), Expect = 2e-12
Identities = 191/285 (67%), Gaps = 6/285 (2%)
Strand=Plus/Plus
Query 1817 GAGTCCGTTGTAATTTTGGAAAAATTGCTACTCTATCAGTATCGTGATGATACGGAA--- 1873
|| ||||||| | |||| ||||| || || | ||| | | | || ||| ||||
Sbjct 8610 GAATCCGTTGAAGTTTTAGAAAATTTATTAAAATTTCAATTTTATAATAATATGGAAGAA 8669
Query 1874 ATTGTGGAAATTTTTCTCCAGGATCTATATGACGTACTCGAAAAACGTATAGCTaaaaaa 1933
|||| |||||||| || || ||||| ||| | || ||| ||| | ||||||
Sbjct 8670 ATTGAA-AAATTTTTAAACA--ATTTATATTGTGTAATTGATAAAATAATACCAAAAAAA 8726
Query 1934 aaTACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAAAATTTTTTCTTCGATTGCATT 1993
||||| | ||| || | ||| | |||||||| ||||| | ||| || ||| ||
Sbjct 8727 AATACTATGTTTATTTTAAGTCCACCAAATGCTGGTAAAAACTATTTTTTTGATGCTTTT 8786
Query 1994 GTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTTAATAAGTACCAAAATTTCCCT 2053
| |||| || ||| ||||| || | | ||||||||||||| || ||||| ||
Sbjct 8787 ATTCATTATTGTTTAAATTTTGGACAAGTAGGTAATTTTAATAGATATTGCAATTTTCCA 8846
Query 2054 TTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAACGAACCA 2098
||| || |||||| | | | | ||| || | ||||| || |||
Sbjct 8847 TTAATGGAATGTGTTGATAGAAGAATTATTTTATGGAATGAGCCA 8891
>SEQ24276
Length=80156
Score = 78.8 bits (86), Expect = 3e-11
Identities = 222/337 (66%), Gaps = 7/337 (2%)
Strand=Plus/Minus
Query 1817 GAGTCCGTTGTAATTTTGGAAAAATTGCTACTCTATCAGTATCGTGATGATACGGAA--- 1873
|| ||||||| | |||| ||||| || || | ||| | | | || ||| ||||
Sbjct 6366 GAATCCGTTGAAGTTTTAGAAAATTTATTAAAATTTCAATTTTATAATAATATGGAAGAA 6307
Query 1874 ATTGTGGAAATTTTTCTCCAGGATCTATATGACGTACTCGAAAAACGTATAGCTaaaaaa 1933
|||| |||||||| || || ||||| ||| | || ||| ||| | ||||||
Sbjct 6306 ATTGAA-AAATTTTTAAACA--ATTTATATTGTGTAATTGATAAAATAATATCAAAAAAA 6250
Query 1934 aa-TACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAAAATTTTTTCTTCGATTGCAT 1992
|| ||| | ||| || | ||| | |||||||| ||||| | ||| || ||| |
Sbjct 6249 AAATACTATGTTTATTTTAAGTCCAGCAAATGCTGGTAAAAACTATTTTTTTGATGCTTT 6190
Query 1993 TGTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTTAATAAGTACCAAAATTTCCC 2052
| | |||| || ||| ||||| || | | ||||||||||||| || ||||| ||
Sbjct 6189 TATTCATTATTGTTTAAATTTTGGACAAGTAGGTAATTTTAATAGATATTGCAATTTTCC 6130
Query 2053 TTTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAACGAACCACAAGCTGAGCCTAG 2112
||| || |||||| | | | | ||| || | ||||| || ||| | || |
Sbjct 6129 ATTAATGGAATGTGTTGATAGAAGAATTATTTTATGGAATGAGCCAATATTAGAATCATC 6070
Query 2113 TGCTTTTGAAACTCTGAAAACGTTACTCGGAGGCGAT 2149
||| |||||| | |||| |||| | ||||| |||
Sbjct 6069 TGCAACAGAAACTTTAAAAATGTTATTTGGAGGTGAT 6033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16110768471080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |