Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_001954.1 Length=8454 Score E Sequences producing significant alignments: (Bits) Value seq143033 161 5e-36 seq183208 159 2e-35 >seq143033 Length=1010 Score = 161 bits (178), Expect = 5e-36 Identities = 127/152 (84%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 6844 GCTGTTCCGCCAGCGTACACAAGCCAGCGTTGCGCGTGCTGTGGTCATACAGCGAAAGAA 6903 ||||| | || |||| || |||||| | || | |||||||||||||| || |||||| Sbjct 27 GCTGTAACTCCGTCGTATACTAGCCAGAGATGTTCCTGCTGTGGTCATACTGCAAAAGAA 86 Query 6904 AACCGCCTGTCACAAAGTCAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGAT 6963 |||||||| |||||||| |||||| || |||||||| ||||||||| ||||||| ||| Sbjct 87 AACCGCCTATCACAAAGCAAATTCATGTGTCAGGTATGCGGATATACAACGAACGCTGAT 146 Query 6964 GTAAATGGCGCTCGTAACATTTTAGCGGCGGG 6995 |||||||| |||||||||||||||||||| || Sbjct 147 GTAAATGGTGCTCGTAACATTTTAGCGGCAGG 178 >seq183208 Length=5204 Score = 159 bits (176), Expect = 2e-35 Identities = 282/400 (71%), Gaps = 17/400 (4%) Strand=Plus/Minus Query 6748 AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTT 6807 ||||||||| ||| || || ||| | ||| | |||||| ||||||||| | | ||||| Sbjct 3824 AAATCAGGT--AAATCGCTCAATATTAGATTAAGGCTGGCATGAAATGCACGGTCAGCTG 3767 Query 6808 GAGTACAAACAGCTCTGGC-GTGGAGGTCAG---GTGCTTGCTGTTCCGCCAGCGTACAC 6863 || || || |||||||||| | ||||||||| | | |||| | || || ||||| Sbjct 3766 GAATAAAAGCAGCTCTGGCGGGGGAGGTCAGATATTAATAACTGTACTTCCGGCTTACAC 3707 Query 6864 AAGCCAGCGTTGCGCGTGCTGTGGTCATA-CAGCGAAAGAAAACCGCCTGTCACAAAGTC 6922 || ||||| | | | | |||||| || | || ||||| ||| |||| |||||| Sbjct 3706 CAGTCAGCGGTATACCTATTACAGTCATACCACCAAAGGAAAATCGCTTGTCTCAAAGTA 3647 Query 6923 AATTCAGATGCCAGGTATGTGGATAT-ACAGCGAACGCCGATGTAAATGGCGCTCGTAAC 6981 |||||| ||| ||| |||| || ||| || ||||| | ||| | || || ||||||||| Sbjct 3646 AATTCATATGTCAGATATGCGGTTATAACGGCGAAGACTGATATTAACGGTGCTCGTAAC 3587 Query 6982 ATTTTAGCGGCGGGGCACGCCGTACTTGCCTGTGGAGG---GACGATGCAGTCAGACCGC 7038 ||||||||| || | || ||||||||||| | | | ||||| || | Sbjct 3586 ATTTTAGCGAGAAAACATGACG---CGGCCTGTGGAGGTAAGTCTGTCTCGTCAGGCCTC 3530 Query 7039 CCGTTGAAGCAGGAACCAGACGCTGAGCAATCAGCCGTCACCCACTAATGGGAATCCCCC 7098 |||| ||||||||||| ||| || | || | | | |||| | ||||| ||| ||| Sbjct 3529 CCGTCGAAGCAGGAACTAGAGTCTAAACACT-AACAGTCAACTGTTAATGAAAATTCCCA 3471 Query 7099 TCCTGAGTCACGAAGTGCGAAGGTGGGGGAGGATGTCAAT 7138 |||||| |||||| ||||| | | ||||| | ||||| Sbjct 3470 TCCTGA-ACACGAAATGCGACGTTATAGGAGGGT-TCAAT 3433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26882052816840