Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_012685.1 Length=5759 Score E Sequences producing significant alignments: (Bits) Value seq70910 80.6 1e-11 >seq70910 Length=2086 Score = 80.6 bits (88), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 2232 AAATTTCAATTTGAGGATAACGACGAAAAAATCACTCAATTTTTAGTAGATTTAATTGA- 2290 |||| ||||||| | || || || |||| || || | ||||| | |||| ||| | Sbjct 706 AAATATCAATTTAACGACAATGAAAAAAACAT-ACAAATATTTTATGAAATTTTATTTAA 648 Query 2291 TGTACTTGATAAACGAGTTCCAAAACAAAATGCTTTTGCAGTAATTTCGCCACCTAGTTC 2350 ||||||||||||| | | |||||| ||||| | || ||| | || ||||||| ||| Sbjct 647 TGTACTTGATAAAAAAATACCAAAAAAAAATTCAATTTTTGTATTATCACCACCTAATTC 588 Query 2351 AGGCAAAAATTTTTTCTTTGA 2371 ||| ||||||| ||| ||||| Sbjct 587 AGGGAAAAATTATTTTTTTGA 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18280078679700