Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_023871.1 Length=2236 Score E Sequences producing significant alignments: (Bits) Value seq14893 143 4e-31 >seq14893 Length=1640 Score = 143 bits (158), Expect = 4e-31 Identities = 149/194 (77%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 1658 TCTCGACCATCAACATCTCCCCCAATAAACTCAAGTCCTCCTGGTGACTCATACTCGGCA 1717 |||||||||||||||||||| |||| ||| || | ||||| || | |||||| ||| | Sbjct 1450 TCTCGACCATCAACATCTCCGCCAACAAATTCGATTCCTCGCGGGGTCTCATAGACGGGA 1509 Query 1718 GG---GACCTCGGCAAATCTCCAGTCTGCATACTTTGAGAGCTGCCCGAATGAGCAAGCA 1774 || |||| ||||||||||| || || ||||| | ||||||||| | || |||||| Sbjct 1510 GGCTTGACC---GCAAATCTCCATTCGGCGTACTTGGCCAGCTGCCCGTAAGAACAAGCA 1566 Query 1775 GTAGCTTTGGGATCCAGCTCATGACAAAGTTGCCAAAATGTGTCTCGATCCTCTGCACCC 1834 | || ||||||||||| | |||| |||| |||||| |||||| || ||||| | Sbjct 1567 GCAGTCTTGGGATCCAGGTGATGAACCAGTTCCCAAAAATGGTCTCGGTCGCGTGCACAC 1626 Query 1835 GTGATCTCAGCCCA 1848 |||||||||| ||| Sbjct 1627 GTGATCTCAGTCCA 1640 Score = 78.8 bits (86), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 900 GATGACGAAAGTGGTGACCAAGAGGCTACTTCGTATCTCTCCGTGGAAAGCAAAGCGGGC 959 ||||| ||| |||||| |||| | | ||||| ||||| || | |||| ||| Sbjct 662 GATGAAGAAGCCGGTGACGTAGAGACAGGGGCATATCTATCCGTCGACAACAAACAGGGA 721 Query 960 ATGGGAGATTACTATGTTTTGGATTTGTTGCAAGCGGGATCAGGCGGTTCAAATTCAGAC 1019 |||||| ||||||| || | | | | ||| | ||||| | || || ||| || Sbjct 722 ATGGGAAATTACTACGTCATTTACATCATACAACCAGGATCGGCAGGAACATCTTCGGAT 781 Query 1020 CAAATTCTGTTGCAGGCTAACTCTACTCTGTATTGGCACGAAAAATAGCGCTGTTGATCT 1079 ||| | | ||| ||| | |||||||||||||||||||||||||| ||| || Sbjct 782 AGAATACAAGTACAGTCTAGCGCTACTCTGTATTGGCACGAAAAATAGGTTCCGTGACCT 841 Query 1080 CAATGAAAACTGCA-TTAGCTTCAAGCCATGACACGTCAGAAGGGTCCAT 1128 ||||||||| | || || || | |||||| || ||| ||| ||||| Sbjct 842 CAATGAAAA-TACAGTTCTTCTCCATCCATGAAACATCACCAGGCTCCAT 890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7043916927912